Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq329 93.3 3e-14 >seq329 Length=298387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || || | ||| | ||| || || || ||||||||||| ||| Sbjct 180539 CCCCCACGCAGACGAAGAACAAGATGAAGAGTAGACTCCTTCTGAATATTATAATCTGCC 180480 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| |||||||| ||||| |||| || | | ||||||||| | || Sbjct 180479 AAAGTTCTCCCATCCTCCAATTGCTTCCCAGCAAAGATAATCCTCTGCTGATCTGGTGGG 180420 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || ||||| || | | | || || |||| | | | ||| |||| |||||||| Sbjct 180419 ATACCCTCTTTATC-CTGAATCTTAGTCTTAACATTATCAATTGTATCTGAACTTTCCAC 180361 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | || || || ||||| ||||| Sbjct 180360 TTCCAAAGTAATCGTCTTTCCAGTAAGTGTCTTCACAAAGATTTGCAT 180313 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| ||||||||||||| ||| || ||||| |||||||| | Sbjct 180315 CATC-CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGT 180257 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || || |||||||| |||| || | | || ||||| | Sbjct 180256 CTGCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAG 180197 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 | | |||||||| ||| || || |||| | | | ||||| | ||| Sbjct 180196 GTGCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTT 180137 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | |||||| || ||||| || | || || || ||||||||||| Sbjct 180136 CAACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347038272579446