Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq204 109 7e-19 seq43 107 2e-18 seq40 84.2 3e-11 seq752 82.4 9e-11 seq66 82.4 9e-11 >seq204 Length=519899 Score = 109 bits (120), Expect = 7e-19 Identities = 148/200 (74%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| |||||||||||||||| |||||||| | Sbjct 246936 AAACCCATCCATCTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTTCC--A 246993 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | |||| | || || ||||||||||||||||| ||||| ||| Sbjct 246994 CCTCCCATTCCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAAGACAATG 247053 Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 || || | || | | ||| ||||| | ||||| ||| || | || ||||| Sbjct 247054 CAAGG-CGCCTTACTCTTAGCCTTCTCAAACAAATCCC--TCACTCTAGAAGCTCCCACT 247110 Query 16149 CCAACAAACATCTCCACAAA 16168 |||||||||| ||||||||| Sbjct 247111 CCAACAAACAGCTCCACAAA 247130 >seq43 Length=1379160 Score = 107 bits (118), Expect = 2e-18 Identities = 230/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || || | || || ||||| || | || | ||||| || |||| ||| Sbjct 939558 TCAAGAATGTCTGCTCGGTTAGTTGCAGCAACAACTATTATACCAGT---GTTACCCTCA 939502 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || |||||||| |||| |||||| || | || ||||||| ||||||||| || Sbjct 939501 AATCCGTCCATCTCAGTCAGAAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCT 939442 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| | || | | | ||||||| ||||| || ||||||| || || ||||| Sbjct 939441 CCAATACCGGTACCCCTTGACCTTCCCACTGCATCTATTTCATCAACAAACACAATGCAA 939382 Query 16095 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| || ||| ||| ||||| || || || || ||||||||||| Sbjct 939381 GGAGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGCACTCGAGATGCTCCCACACCAAC 939323 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | || | ||| || | || || || ||| || ||| || | Sbjct 939322 AAACATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 939264 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || || || || ||||| || || ||||| Sbjct 939263 CAATAGCCTTAGCTAGCAGGGTCTTTCCAGTCCCTGG 939227 >seq40 Length=1826671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || || |||| | || || || |||||||| || || ||||||||||| | Sbjct 1766625 TCCTTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGC 1766684 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| | || | ||||| || ||||| || | ||||| || | |||||| ||| Sbjct 1766685 TTCTGCTCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAAC 1766744 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| | || || ||||| || || || ||| || ||||| Sbjct 1766745 GAGTTGATATCGCGTGATGAAGGGCTTCACTGTGATTTTGC 1766785 >seq752 Length=99127 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 ||||| | ||| ||||| |||||| || || || | |||| |||||| | | Sbjct 75746 TTTGACTTTGATAAACTGGCTGAAGTTGTTGAAGTGGTTACCACAAACTTAAACAAAATA 75687 Query 112554 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 |||||| || || ||||||||||| ||||| | | ||| ||||||||||| | ||| Sbjct 75686 ATTGATGTGAACTTCTACCCCGTTGAAACTGCAAGAAGATCAAATATGAGACATAGGCCA 75627 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGAT 112643 ||||| | || |||||||| || || ||| Sbjct 75626 ATTGGAATTGGAGTCCAAGGCCTTGCTGAT 75597 >seq66 Length=1001823 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||| | || | || || || || ||||| || ||||||||||| || || Sbjct 952941 CTTTGCCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGAAGTTT 953000 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | |||||||| ||||| || | ||||| || | |||||| ||||| Sbjct 953001 CTGCTCCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGA 953060 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| || || || ||||| || || ||| Sbjct 953061 GCTGATATCGCGAGACGAAGGGCTTCAC 953088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620135143228640