Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq752 122 1e-22 seq204 102 1e-16 seq477 100 3e-16 seq43 98.7 1e-15 seq40 86.0 7e-12 >seq752 Length=99127 Score = 122 bits (134), Expect = 1e-22 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || |||||||| |||||||||||||| ||||| | || || ||||| |||| || Sbjct 77082 TGGGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGGGAAGCATGGGTGAAC-CACCTCTG 77140 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || |||||| | | | || ||||| || ||| |||||| || | || Sbjct 77141 GGACATGAAGTGGTATGTTTTGATAGCCGACTCAATATCATCCTTGTGGATCCCAACAGC 77200 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||||||| | |||| | | || ||| || || | |||| Sbjct 77201 AACCCTCATCAACATGTGTTGGGGTCTCTCCA-CAACAGCCCCTCGGACCTTTAAGAGAT 77259 Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | || ||||||||||||||| ||||||| || || ||||| |||||| Sbjct 77260 ATGATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAATCAAAGTCCC 77307 >seq204 Length=519899 Score = 102 bits (112), Expect = 1e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || |||||||||||||||| |||||||| | Sbjct 246936 AAACCCATCCATCTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTTCC--A 246993 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | |||| | || || ||||||||||||||||| |||||||| Sbjct 246994 CCTCCCATTCCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAAGACAATG 247053 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | || | | || | ||||| | ||| | || || || ||||| || Sbjct 247054 CAAGG-CGCCTTACTCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACTCC 247112 Query 9458 AACAAACATCTCCACAAA 9475 |||||||| ||||||||| Sbjct 247113 AACAAACAGCTCCACAAA 247130 >seq477 Length=199787 Score = 100 bits (110), Expect = 3e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| |||||||||||||| ||||| | || || ||||| | ||| Sbjct 10034 TGGGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGGGAAGCATGGGTGAACCATCTCTGG 9975 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| || ||||| | | | || ||||| || ||| |||||| || | || Sbjct 9974 GACATGAAGTGATATGTTTTGATAGCCGACTCAATATCATCCTTGTGGATCCCAACAGCA 9915 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| |||| || |||||| | |||| | | || || || | | ||||| Sbjct 9914 ACCCTCATCAACAAGTGCTGGGGTCTCTCCA-CAACAGCCCCTCCGACCTTCAAGAGATA 9856 Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || ||||||||||||||| |||||||||| || ||||| |||||| Sbjct 9855 TGATC-TCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCCC 9809 >seq43 Length=1379160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/333 (67%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | || || || || || | || | ||||| || | | ||||| Sbjct 939558 TCAAGAATGTCTGCTCGGTTAGTTGCAGCAACAACTATTATACCAGTGTTACCCTCAAAT 939499 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 || |||||||| |||| ||| || || | || ||||||| ||||||||| || | Sbjct 939498 CCGTCCATCTCAGTCAGAAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCTCCA 939439 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 ||| | || | | | ||||||| ||||| || ||||||| || ||||| || || Sbjct 939438 ATACCGGTACCCCTTGACCTTCCCACTGCATCTATTTCATCAACAAACACAATGCAAGGA 939379 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 |||||| || | | || ||||| || || | || ||||||||||||||| Sbjct 939378 GCATTTTCCTTTGCCTTCTTGAAAAGATCACGCACTCGAGATGCTCCCACACCAACAAAC 939319 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || ||||| | || | ||| || | || || || ||| || ||| || ||||| Sbjct 939318 ATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 939260 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || || || ||||| || || ||||| Sbjct 939259 AGCCTTAGCTAGCAGGGTCTTTCCAGTCCCTGG 939227 >seq40 Length=1826671 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || || ||||| || || || | || ||||||||| || || Sbjct 1766786 GGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCC 1766727 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | || ||||| |||| ||| | || | |||||| || |||||||| || Sbjct 1766726 GGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAAAT 1766667 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || ||||| || || |||| ||| | ||||||||||| Sbjct 1766666 CCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGA 1766625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589403636532880