Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq52 345 5e-90 seq119 228 9e-55 seq1508 161 1e-34 seq219 161 1e-34 seq1 136 4e-27 >seq52 Length=1114353 Score = 345 bits (382), Expect = 5e-90 Identities = 510/720 (71%), Gaps = 2/720 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| | || | | ||| | ||||| |||| ||||| ||||| || Sbjct 279554 TTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 279495 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||| | ||||| || ||| | | ||| || ||| | || || |||||| | || Sbjct 279494 ATGATCTCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTACTCC 279436 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || ||||| || Sbjct 279435 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 279376 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || | ||||| || |||| |||| | || || || | ||||| || ||||| Sbjct 279375 TATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAAT 279316 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | |||||||||||||| |||||||||||||| | | | | Sbjct 279315 ATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGT 279256 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| | |||||||| | | | | Sbjct 279255 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 279196 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 ||||||||| | |||||||| |||||| ||||| || ||||| | | || ||| Sbjct 279195 TCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGC 279136 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| | ||||| || || |||||||||||||||||| |||| Sbjct 279135 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAAT 279076 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| | |||||||| ||| | ||||||| || ||| ||||||| |||||||| || Sbjct 279075 CTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACCC 279016 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| |||| ||| | |||||||| || ||||| || |||||||| Sbjct 279015 ATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGG 278956 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | || || || || || | | |||||| || | || Sbjct 278955 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAAGG 278896 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 278895 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 228 bits (252), Expect = 9e-55 Identities = 436/639 (68%), Gaps = 20/639 (3%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| | |||| | ||| | ||||| |||| |||| ||||| | Sbjct 179432 TTCTGTAATTGGATAACCAACACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTCT 179491 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTC-ATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||| || Sbjct 179492 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATCCATTATAGCCTTCATTGTTG---- 179546 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 |||| || || || | |||||||| | || ||||| | || |||| || Sbjct 179547 --------ATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAA 179598 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || | ||| || |||| |||| || || || ||||| || ||||| Sbjct 179599 TATTATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAAT 179658 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC---CAGTTGGT 168786 |||||||| | | | |||||||||||||| |||||||||||||| || | || Sbjct 179659 ATGGGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGT 179718 Query 168787 AATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATA 168846 ||| | ||||| || | || | || || |||||| |||||||| | | Sbjct 179719 --TCTAC-ACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTT 179775 Query 168847 CAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATT 168906 | | |||||||| | |||| || |||||| ||||| || ||||| | | | | Sbjct 179776 CCGTTTAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTAC 179835 Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | |||||| | | ||| || | | |||||||||||||||||||| Sbjct 179836 TGCTGTTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGG 179895 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||| || | || |||||||| || | |||||||| || ||||||||||| |||||||| Sbjct 179896 AATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 179955 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCA 169086 | || || ||| ||| ||| | ||| | ||||| || || ||||| || ||||| Sbjct 179956 CTCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 180015 Query 169087 TGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTAC 169125 |||||| |||||||| ||| | | ||||| || || || Sbjct 180016 TGGTTCCCTTGTAACTTCTAGTTTGATCAGGGAAACAAC 180054 Score = 208 bits (230), Expect = 9e-49 Identities = 241/325 (74%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| ||||||||||| | |||||| |||||||| || || || ||||| || || Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267 ||| |||| |||||||| ||||| |||||||||||||| | | | ||||||||| || Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327 || | | || || ||| || | ||||| || || | ||||| |||| || | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 169328 AACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCT 169387 || || || || || || || |||||||| || || ||| | | ||| | ||| | Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | ||||| | | ||||||| |||| |||| |||||||| ||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 169448 GCTCACAACTTCCCACTAGACTTAG 169472 ||||| |||||||| |||||| ||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCTAG 240754 >seq1508 Length=419047 Score = 161 bits (178), Expect = 1e-34 Identities = 210/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 272756 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 272697 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 272696 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCC 272638 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || ||||| || Sbjct 272637 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 272578 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || || | ||||| || ||||| Sbjct 272577 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 272518 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||| || | | |||||||||||||| |||||||||||||| Sbjct 272517 CTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTA 272470 >seq219 Length=449544 Score = 161 bits (178), Expect = 1e-34 Identities = 210/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 176449 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 176390 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 176389 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCC 176331 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || ||||| || Sbjct 176330 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 176271 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || || | ||||| || ||||| Sbjct 176270 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 176211 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||| || | | |||||||||||||| |||||||||||||| Sbjct 176210 CTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTA 176163 >seq1 Length=3292865 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 169274 TTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTG 169333 || || || ||| || | ||||| || || | ||||| |||| ||||| |||||||| Sbjct 1433787 TTTCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTA 1433728 Query 169334 AACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGG 169393 || || || || || |||||||| || || ||| | | ||| | ||| ||| ||| Sbjct 1433727 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGG 1433668 Query 169394 GGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCAC 169453 | ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||||| Sbjct 1433667 GCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 1433608 Query 169454 AACTTCCCACTAGACTTAGC 169473 |||||||| |||||| |||| Sbjct 1433607 AACTTCCCTCTAGACCTAGC 1433588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563889420893760