Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq52 331 1e-85 seq119 217 2e-51 seq1508 134 2e-26 seq219 134 2e-26 seq1 109 8e-19 >seq52 Length=1114353 Score = 331 bits (366), Expect = 1e-85 Identities = 491/696 (71%), Gaps = 0/696 (0%) Strand=Plus/Minus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGC 215376 ||| || ||| | ||| |||| ||||||||||| | ||||| || | | | | || Sbjct 279531 TGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGC 279472 Query 215377 TACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAG 215436 || || || || |||| ||||| ||| | ||||| || ||||| || || || | Sbjct 279471 AACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 279412 Query 215437 AGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACC 215496 || || ||| | || ||| || | || || || || || || | ||||| || | || Sbjct 279411 TGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCC 279352 Query 215497 TAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGA 215556 || ||| | || || || || ||||| || || || |||||||| ||| | ||||| || Sbjct 279351 TACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGA 279292 Query 215557 ATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTC 215616 ||| | ||||||||||| |||| |||| || | | |||||| | ||||| | | Sbjct 279291 GTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 279232 Query 215617 TGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTG 215676 | || || | ||||||||||| || | | |||||||| | |||||||| Sbjct 279231 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGC 279172 Query 215677 TGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGG 215736 |||||| || ||||| || || | | || ||| || ||| | | || ||| |||| Sbjct 279171 TGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGG 279112 Query 215737 TCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTT 215796 ||| || || ||||||| |||||| || |||||||||| | ||||||| ||| | Sbjct 279111 TCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGAT 279052 Query 215797 TGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGG 215856 | | |||||||||||| ||||||| || ||||||||||| |||||||||||||| | ||| Sbjct 279051 TATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGG 278992 Query 215857 TGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAAT 215916 ||| |||||||| || | || ||| ||||| ||||| | || || ||| | | || Sbjct 278991 TGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 278932 Query 215917 CAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGA 215976 || || || || | | |||||| || | ||||||| ||||| |||||||| || Sbjct 278931 TAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 278872 Query 215977 AACATACAACATCGTAGCTGCACACGGTTACTTTGG 216012 ||| || || ||||||||||| || ||||| ||||| Sbjct 278871 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 217 bits (240), Expect = 2e-51 Identities = 358/514 (70%), Gaps = 2/514 (0%) Strand=Plus/Plus Query 215416 TGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACAT 215475 ||| ||||| || || || | || || || | || ||| || | || | || || || Sbjct 179542 TGTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATAT 179601 Query 215476 CATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTG 215535 || || | ||| || | |||| ||| || || || | ||||| || || || || Sbjct 179602 TATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATG 179661 Query 215536 GGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTT 215595 |||||| || | ||||| || ||| | ||||||||||| |||| ||| || | | Sbjct 179662 GGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCT 179721 Query 215596 CCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATT 215655 |||||| | ||||| | || || || ||||||||||| || | | || Sbjct 179722 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTTT 179781 Query 215656 AGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCT-TTGCAG 215714 ||||||| | |||| || |||||| || ||||| || || | | | ||| ||| | Sbjct 179782 AGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAG-TACCTACTGCTG 179840 Query 215715 TATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCT 215774 | ||| | | || ||| ||| ||| || | | ||||||| |||||| || ||||||| Sbjct 179841 TTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCT 179900 Query 215775 CTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCAT 215834 | | || ||||||| || |||| |||||||||||||||||||| || |||||| ||| Sbjct 179901 CCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCAT 179960 Query 215835 TCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTT 215894 | |||||||||||||| ||||||| ||||| || || | || ||| ||||| |||| Sbjct 179961 TTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 180020 Query 215895 CACTTGTTACATCTTCTCTAATCAGAGAGACAAC 215928 | ||||| || ||| | | ||||| || ||||| Sbjct 180021 CCCTTGTAACTTCTAGTTTGATCAGGGAAACAAC 180054 Score = 168 bits (186), Expect = 1e-36 Identities = 239/336 (71%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| ||||||| ||||| || || ||||||||||| || ||||| ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 ||||| | ||||||||||| || |||||||||||| | | | ||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | ||||| | |||| ||| ||||| | ||| | ||||| | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 || | || |||||||| |||||||| ||||| || || ||| || ||| | Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || | ||||| | | |||| |||| |||| ||||| || ||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||| |||||||| ||||| | | |||| |||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCTAGATGCTATTGAA 240765 >seq1508 Length=419047 Score = 134 bits (148), Expect = 2e-26 Identities = 208/297 (70%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 272735 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 272676 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || |||| ||||| ||||| ||||| || ||||| || || || Sbjct 272675 GCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 272616 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | || || || || || || || ||||| || | Sbjct 272615 CGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATT 272556 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| || || ||||||||||| ||| | ||||| Sbjct 272555 CCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGAT 272496 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || ||| | ||||||||||| |||| |||| || | | |||||| | ||||| Sbjct 272495 GAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 272439 >seq219 Length=449544 Score = 134 bits (148), Expect = 2e-26 Identities = 208/297 (70%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 176428 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 176369 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || |||| ||||| ||||| ||||| || ||||| || || || Sbjct 176368 GCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 176309 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | || || || || || || || ||||| || | Sbjct 176308 CGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATT 176249 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| || || ||||||||||| ||| | ||||| Sbjct 176248 CCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGAT 176189 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || ||| | ||||||||||| |||| |||| || | | |||||| | ||||| Sbjct 176188 GAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 176132 >seq1 Length=3292865 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | || |||||||| |||||||| ||||| || || ||| Sbjct 1433745 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 1433686 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||||||||| || | ||||| | || |||||||||||||| ||| Sbjct 1433685 CGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATG 1433626 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || ||||| ||||| |||||||| ||||| | |||||| |||| Sbjct 1433625 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTATTGAA 1433578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744352705297760