Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq52 322 6e-83 seq119 233 2e-56 seq1508 134 2e-26 seq219 134 2e-26 seq1 122 1e-22 >seq52 Length=1114353 Score = 322 bits (356), Expect = 6e-83 Identities = 504/720 (70%), Gaps = 1/720 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| | || | ||||| | || |||| ||||| ||||| ||||||||| Sbjct 279547 ATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCT 279488 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | |||| | ||| | | ||||| | || ||||| || |||| || || | Sbjct 279487 CTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAG 279428 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | |||||||| | || || | | || || || || || || | Sbjct 279427 ATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTT 279368 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||| || |||| |||| | || || || | ||||| ||||| || ||||||| Sbjct 279367 TGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAG 279308 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||||||||| || || |||||||||||| || || || | | |||| Sbjct 279307 CGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACT 279248 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || || |||||| | |||||||||| | |||| |||||| Sbjct 279247 TCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTA 279188 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 |||| |||||||| ||| |||||||| |||||||| ||| || ||||| |||| Sbjct 279187 TGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCT 279128 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | || || ||||||| ||| || || || || ||||||||| | ||||| |||| Sbjct 279127 TGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTA 279068 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 || ||||| ||| | ||||||| || ||| ||||||| |||||||||||||| || | Sbjct 279067 ATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACA 279008 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || | |||| | ||||| || | || || || ||||| ||||| | | Sbjct 279007 TGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGG 278948 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | || || || || ||| | || || || || | || |||| || Sbjct 278947 TAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGAT 278888 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 |||| ||||| |||||||| || || || || || || ||||| || ||||| ||||||| Sbjct 278887 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG-AGACTTA 278829 >seq119 Length=805478 Score = 233 bits (258), Expect = 2e-56 Identities = 365/522 (70%), Gaps = 0/522 (0%) Strand=Plus/Plus Query 169812 TGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACAT 169871 ||| || || ||||| || | |||||||| | || || | | || | || || || Sbjct 179542 TGTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATAT 179601 Query 169872 CATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTG 169931 || || | ||| || |||| |||| || || || ||||| ||||| || || Sbjct 179602 TATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATG 179661 Query 169932 GGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTT 169991 |||||| || | | ||||||||||| || || |||||||||||| || | || | | Sbjct 179662 GGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCT 179721 Query 169992 CCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTT 170051 |||||| | | || | || || |||||| |||||||||| | |||||| Sbjct 179722 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTTT 179781 Query 170052 AGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGT 170111 ||||||||| |||| || ||| |||||||| |||||||| ||| | | ||||| Sbjct 179782 AGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTACTGCTGT 179841 Query 170112 ATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTC 170171 ||||| | || || ||| ||| ||| | | || || || ||||||||||| ||||| Sbjct 179842 TTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCTC 179901 Query 170172 AGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATT 170231 | ||| || ||||| || | |||||||| || ||||||||||| ||||||||| |||| Sbjct 179902 CGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATT 179961 Query 170232 CCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTC 170291 || ||| ||| || ||||| | ||||| || | || || || ||||| ||||| Sbjct 179962 TCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 180021 Query 170292 ACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGA 170333 |||||||| ||| | | ||||| || |||||| | || || Sbjct 180022 CCTTGTAACTTCTAGTTTGATCAGGGAAACAACATAAAATGA 180063 Score = 183 bits (202), Expect = 4e-41 Identities = 233/321 (73%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| |||||| ||||| | |||||| || || || || || || ||||| || ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 ||| || | ||||||||||||||||| || ||||| |||| | | ||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 170467 GCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTT 170526 ||| | | ||||||||| | || ||||| ||| | | |||||| | || || | || Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 170527 AACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCT 170586 || | ||||| || || |||||||| || | || ||| | ||| ||| || | Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 170587 ACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAAT 170646 || ||||| || | ||||| | | ||||| | |||| |||| |||||||| |||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 170647 GCACACAACTTCCCACTTGAC 170667 || || |||||||| || ||| Sbjct 240730 GCTCATAACTTCCCTCTAGAC 240750 >seq1508 Length=419047 Score = 134 bits (148), Expect = 2e-26 Identities = 211/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 272749 ATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 272690 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | |||| | ||| | | ||||| | || ||||| || ||||| || || | Sbjct 272689 CTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAG 272630 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | |||||||| | || || | | || || || || || || | Sbjct 272629 ATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTT 272570 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 | ||||| || |||| |||| || || || | ||||| ||||| || ||||||| Sbjct 272569 CGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAG 272510 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||||||||| || || |||||||||||| || || || | | |||| Sbjct 272509 CGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACT 272450 Query 169997 TC 169998 || Sbjct 272449 TC 272448 >seq219 Length=449544 Score = 134 bits (148), Expect = 2e-26 Identities = 211/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 176442 ATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 176383 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | |||| | ||| | | ||||| | || ||||| || ||||| || || | Sbjct 176382 CTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAG 176323 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | |||||||| | || || | | || || || || || || | Sbjct 176322 ATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTT 176263 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 | ||||| || |||| |||| || || || | ||||| ||||| || ||||||| Sbjct 176262 CGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAG 176203 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||||||||| || || |||||||||||| || || || | | |||| Sbjct 176202 CGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACT 176143 Query 169997 TC 169998 || Sbjct 176142 TC 176141 >seq1 Length=3292865 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 170473 TTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTT 170532 || ||||||||| | || ||||| ||| | | |||||| | || ||||| || ||| | Sbjct 1433787 TTTCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTA 1433728 Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592 ||||| || || |||||||| || | || ||| | ||| ||| || ||| ||| Sbjct 1433727 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGG 1433668 Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652 || || | ||||| | || ||||| ||||||||||| |||||||| |||||||| || Sbjct 1433667 GCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 1433608 Query 170653 AACTTCCCACTTGAC 170667 |||||||| || ||| Sbjct 1433607 AACTTCCCTCTAGAC 1433593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582277814372800