Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq810 122 6e-23 seq865 118 7e-22 seq909 111 1e-19 seq37 107 1e-18 seq1663 104 2e-17 seq20 98.7 6e-16 seq1435 89.7 3e-13 >seq810 Length=562993 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||||||||| | ||| |||| |||| || Sbjct 115552 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCGAGGGTTCGGCCATCCTCA 115611 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | | ||||||||| | || | |||||||| || Sbjct 115612 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGG 115671 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||||| || | ||| ||||| ||| Sbjct 115672 ATCTTAGCCTTCACGTTGTCAATTGTGTCGGAGCTTTCAACCTCCAGGGTAATGGTCTTT 115731 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| |||||||||||||||||||||||| Sbjct 115732 CCCGTAAGAGTCTTCACAAAGATCTGCATA 115761 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | | ||||||||||| || |||||||| || || || |||| Sbjct 115076 TTCCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCG 115135 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | |||| |||||||| || ||||| || || | | ||||||||| | | Sbjct 115136 CAAGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 115195 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | ||||||||||| ||||||| || || || | ||||| || | | Sbjct 115196 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTAAC--AT--TGTCGATGGTGTCTGAGCTC 115251 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | || ||||| |||||||| | ||||| || || |||||||| Sbjct 115252 TCAACCTCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| | || | || || |||||||| ||||| || Sbjct 116026 TCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCGTCCTCAAGCTGTTTCCCGGCGAAG 116085 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||||| | || | ||||||||| || |||||| ||||| Sbjct 116086 ATCAGTCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAATCTTAGCCTTGACATTG 116145 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | ||| || || ||||| ||||| || |||||| Sbjct 116146 TCAATGGTGTCAGAGCTTTCGACTTCAAGGGTGATTGTCTTTCCGGTGAGGGTTTTCACA 116205 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 116206 AAGATTTGCAT 116216 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | | | | || |||| || || || || || ||||| Sbjct 114886 TCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAAG 114945 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | |||||||||||| ||||| || || Sbjct 114946 ATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTA 115005 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || || | ||| ||||| ||||| || | ||||||||| Sbjct 115006 TCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACA 115065 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 115066 AAAATCTGCAT 115076 >seq865 Length=406355 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | |||| |||| |||| || || || |||||||| || Sbjct 6822 TTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCGGCGAA 6881 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||||||| | || | |||||||| || ||| || |||||| Sbjct 6882 GATAAGTCTTTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAATTTTTGCCTTGACGTT 6941 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||||| |||| ||| ||||| || || || ||||||||||| Sbjct 6942 GTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTTAGAGTCTTCAC 7001 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 7002 AAAGATCTGCATA 7014 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| || ||||| ||||| ||||| | ||| |||| |||| || Sbjct 6577 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCTTCA 6636 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | | ||||||||| | || | || ||||| || Sbjct 6637 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 6696 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||||| |||| ||| ||||| || Sbjct 6697 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTC 6756 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||||||||||||||||||| Sbjct 6757 CCTGTTAGAGTCTTCACAAAGATCTGCATA 6786 >seq909 Length=350832 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| ||| ||| || || ||||| || || | ||| |||| | || || Sbjct 176293 AACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 176352 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || || || |||||||||||| | || | || |||||||| Sbjct 176353 AAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 176412 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| || | ||||| || || ||||| || | |||||||| Sbjct 176413 GATCTTGGCTTTGAC--AT--TGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGG 176468 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || || || ||||| || |||||||| || Sbjct 176469 TTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 176505 >seq37 Length=1785839 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| ||||| ||||| ||||| | ||| ||| | |||| ||| Sbjct 885910 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCATCTTCC 885851 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||||||| || || || ||||| ||||| | || | || || ||||| Sbjct 885850 AACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGG 885791 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | || || || || || | ||||||||||||| Sbjct 885790 ATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATGGTTTTT 885731 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || || || || ||||||||||| || Sbjct 885730 CCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq1663 Length=237253 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | ||| | || || |||||||||||||| || Sbjct 10401 TCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAAG 10342 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || |||||||| ||||| ||| || || Sbjct 10341 ATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCAC--AT 10284 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || || || || | |||||||||||| || || || || || Sbjct 10283 --TGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTT 10226 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 10225 CACGAAGATCTGCATTTT 10208 >seq20 Length=1286389 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || ||| ||||| ||||| ||||| | ||| |||| | || || Sbjct 250545 ACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCA 250486 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||||||| | || | || ||||| || Sbjct 250485 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGG 250426 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || || ||||| || | |||||||||||| Sbjct 250425 ATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTC 250366 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || || ||||| || |||||||| || Sbjct 250365 CCCGTTAGGGTTTTCACGAAAATCTGCATTTT 250334 >seq1435 Length=543809 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||||||||| || || | || ||| | |||| || Sbjct 91935 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGTGTTCTTCCATCCTCT 91876 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || ||||| || || || ||||||||||| | || | ||||| ||||| Sbjct 91875 AATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCTTGG 91816 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | || || || || || | |||||||||||| Sbjct 91815 ATCTTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCACTTCTAGGGTTATGGTTTTC 91756 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| || || ||||| Sbjct 91755 CCAGTTAGGGTTTTCACGAAAATTTGCAT 91727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324323958588336