Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq52 428 5e-115 seq119 315 8e-81 seq1508 188 8e-43 seq1 127 2e-24 >seq52 Length=1114353 Score = 428 bits (474), Expect = 5e-115 Identities = 529/721 (73%), Gaps = 2/721 (0%) Strand=Plus/Plus Query 84237 CCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAA 84296 || || || || |||||||| || |||||||||||||| || ||||||||||| ||||| Sbjct 278836 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAA 278895 Query 84297 CCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAA 84356 || | || || |||||| ||| ||||| | || | | |||||| || | ||| Sbjct 278896 CCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 278955 Query 84357 CCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAG 84416 |||||||| ||| ||||| | ||||||||||||||| | || || ||||||||||| Sbjct 278956 CCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATGTGAAAT 279015 Query 84417 GGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAG 84476 || |||||||||||||| | || |||||||| | || ||| ||||||| | || ||| Sbjct 279016 GGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTACCAGAG 279075 Query 84477 ATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACA 84536 || | || ||||| |||||||| || ||||| |||| || || | | ||| ||| Sbjct 279076 ATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAGAAAACA 279135 Query 84537 GCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGA 84596 |||| ||| ||||||||||||| || || |||||| ||||| || |||||||| ||| Sbjct 279136 GCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATACCTAGA 279195 Query 84597 CGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAG 84656 || | ||||||||| ||||||||||| ||| | | |||||| | |||||| | Sbjct 279196 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 279255 Query 84657 ACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAA 84716 |||| |||| |||||| |||||||| |||| ||| || || | ||| |||||||| Sbjct 279256 ACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 279315 Query 84717 ATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATG 84776 || ||||| || || | || ||||| |||| | |||| | |||||| |||| || Sbjct 279316 ATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAAATAATA 279375 Query 84777 TTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGG 84836 || |||||||| | ||||| || | || || ||||| ||||| |||||||| ||||| Sbjct 279376 TTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGA 279435 Query 84837 GGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCAT 84895 || | | ||| ||| || || || || ||||| ||| |||| | || || | ||||| Sbjct 279436 GGAGTAGCAATGAAGGCTATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGAGATCAT 279494 Query 84896 AAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 | | |||||||| |||| || | |||||| | | || ||| | ||||| |||||| Sbjct 279495 CAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAATGTTGGTTATCCAATTACAGAA 279554 Query 84956 G 84956 | Sbjct 279555 G 279555 >seq119 Length=805478 Score = 315 bits (348), Expect = 8e-81 Identities = 457/645 (71%), Gaps = 14/645 (2%) Strand=Plus/Minus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 |||||| ||| ||||| | ||| | | |||||| ||||| ||||||||||| ||| | Sbjct 180062 CATTTTATGTTGTTTCCCTGATCAAACTAGAAGTTACAAGGGAACCATGCATAGCACTAA 180003 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || ||||||||||||| || || ||||||||||| | ||||||||||||| Sbjct 180002 ATAGGGAGCCGCCGAATACACCAGGTACACCTAACATGTGAAATGAGTGCATAAGGATGT 179943 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || || |||||||| |||| || ||||||| || | ||||| || || ||||| | Sbjct 179942 TGTGCTCAGCCTGGAATACAATCACAAAGTTGAAAGTATCGGAGATTCCTAGAGGCATAC 179883 Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||||||| | | ||||| ||| || || | | ||| ||||||| | |||||| Sbjct 179882 CATCAGAATAGGTTCCTTGATCGATTGGGTAGATCAAGAAAACAGCAGTAGGTACTGCAA 179823 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCC 84612 ||||||| || || |||||| || | || |||||||| | ||| | |||||||| Sbjct 179822 CTGGAGCGGAATATGCAACAGCAATATAAGGGCGCATACCTAAACGGAAACTAAGTTCCC 179763 Query 84613 ATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG 84672 | ||| ||||||| ||| | | |||||| | |||||| | |||| ||| ||||| Sbjct 179762 ACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTTGTTCATAAG 179703 Query 84673 GTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTA 84732 | |||||||| |||| ||| || || | || |||||||| || ||||| || || Sbjct 179702 GACCACCATTGTATAACCACTCATCAACCGATGTCGCTTCCCATATTGGATAAAAGTGCC 179643 Query 84733 GACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGA 84792 || ||||| ||| | |||| | |||| | ||||| || || |||| ||| | | Sbjct 179642 ACCCTATAGCTGCAGAAGTAGGAATAATGGCAGCCGAAATAATATTATTTCAGTAAAGTA 179583 Query 84793 GAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATG 84852 |||| || | || || ||||| ||||| |||||||||| ||| ||| | Sbjct 179582 GAGATCCGGACACAGGTTCACGAATACCATCAATATCAA------------CAATGAAGG 179535 Query 84853 CAATGAT-GAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAA 84911 | || || || ||||| ||| |||| | || || || |||||| | ||||||| Sbjct 179534 CTATAATGGATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATAGAAACACCAAACCGT 179476 Query 84912 CCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||| || | |||||| | |||| ||| | ||||| ||||||| Sbjct 179475 CCAATGTAAAGACGGTTTTCAGTGTTGGTTATCCAATTACAGAAG 179431 Score = 224 bits (248), Expect = 1e-53 Identities = 238/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||| |||| |||| | ||| |||| Sbjct 240743 GGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAGGACGGTTAATG 240684 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 240683 ATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 240624 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || | || || |||| ||| | ||||| ||||||||| || || Sbjct 240623 AAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 240564 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 240563 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 240504 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || || |||||||| || |||||||||||||| | |||||| Sbjct 240503 AAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTCCCTCTTGA 240444 Query 84285 CCGAACTTGTAACC 84298 ||||| ||||||| Sbjct 240443 CCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 188 bits (208), Expect = 8e-43 Identities = 249/343 (73%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 84615 TCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGT 84674 ||||||||||| ||| | | |||||| | |||||| | |||| |||| |||||| Sbjct 272416 TCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGA 272475 Query 84675 CCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGA 84734 |||||||| |||| ||| || || | ||| |||||||| || ||||| || || | Sbjct 272476 CCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAGATTGGATAAAAGTGCAAC 272535 Query 84735 CCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGA 84794 || ||||| ||| | |||| | |||||| ||||| || || |||||||| | ||| Sbjct 272536 CCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGA 272595 Query 84795 GAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCA 84854 || || | || || ||||| ||||| |||||||| ||||| || ||| ||| ||| || Sbjct 272596 GATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCT 272655 Query 84855 ATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACC 84913 || || || ||||| ||| |||| | || || || ||||| | | |||||||| || Sbjct 272656 ATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 272714 Query 84914 AACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 || || | |||||| | |||| ||| | ||||| ||||||| Sbjct 272715 AATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATTACAGAAG 272757 >seq1 Length=3292865 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 1433600 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 1433659 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 1433660 ATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 1433719 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 1433720 AAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 1433779 Query 84165 ACTGG 84169 || || Sbjct 1433780 ACAGG 1433784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570714737318960