Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq477 127 2e-24 seq752 116 4e-21 seq40 109 6e-19 >seq477 Length=199787 Score = 127 bits (140), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 ||| ||||| ||| || |||||||| || | ||||| ||||||| ||| | ||| Sbjct 10392 ATTGCACCTTTTCGCTTCCCTCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACT 10333 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 | ||||| |||||||| ||||||||| | ||||| || || |||||||||||| | Sbjct 10332 CGCAACATAGGGACAATGCCATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTG 10273 Query 48459 GCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 || | || || || |||| || ||||| || || ||| || | ||||||| Sbjct 10272 GCACGGATGTTGTGAACAGAAACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACAC 10213 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 || || || |||||||| ||||| || ||||||||| ||||||| | ||||| || Sbjct 10212 TCCTTCAGAGTGTCATAAATCCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAG 10153 Query 48579 CTA 48581 ||| Sbjct 10152 CTA 10150 >seq752 Length=99127 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| ||||||| ||| | |||| ||||| || ||||| ||| Sbjct 76764 CCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCCA 76823 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || |||||||||||| | || | || || || ||| Sbjct 76824 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGAA 76883 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||| || || ||| || | ||||||| || | || |||||||| Sbjct 76884 ACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAATC 76943 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||||||| ||||||| | ||||| || ||| Sbjct 76944 CCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 |||||||| ||||| || | || | |||| | ||| | |||||| ||||| |||||| Sbjct 74452 TCCACAGTGAACTTGATAGCATCAGCTGCTGCTCGTGTCCTTAAATAGTACATGCCAGTC 74511 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || ||||| ||||||| |||| || |||| | |||||| || | || | |||| Sbjct 74512 TTCAAACCCTTACTCCATGCATAAAAGTGCAGAGAAGTTAACTTTCCAAAATTGGGTTGC 74571 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 || |||||||| || ||||| |||||||| || || | ||||||||||| Sbjct 74572 TCCATGTGAATATTCAGGCTCTGACTTTGATCAATGAAACATCCACGGTCAGCTGCCATG 74631 Query 47157 TCTAAAATAA--CCCTTTGTGGTATCTCCCATACTGT 47191 || || ||| |||||| |||||||| || || Sbjct 74632 TC--AACTAATGTTCTTTGTTTGATCTCCCACACAGT 74666 >seq40 Length=1826671 Score = 109 bits (120), Expect = 6e-19 Identities = 577/911 (63%), Gaps = 24/911 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| |||||||| ||||||| || |||||||| ||||| || || | | || || | Sbjct 1767080 TTTCTGATATTCCCCAACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTGAAGAGAAATCAA 1767021 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| |||||||||| ||| ||| || | || | || | | | || Sbjct 1767020 CTCCATCCAATCAAATGGGTTTACCACACCGTACACCTTACCACACCCAAGTGCAGCTAA 1766961 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || ||||| | ||| || |||| | ||||| ||||| |||| | Sbjct 1766960 CAATCTATCAGCAACAAACTCAATGTACTGACTCATAAGCTCACAGTTCATCCCTACCAG 1766901 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || || | ||| || | ||||| |||| || || || ||| | || Sbjct 1766900 CTTTACCGGCAGCGAATCCGTCACGAATTCGCGTTCGATCGCCACCGCTTCTTCCACTAT 1766841 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTAT---AGAAGATGTTTAAACATCAAACATG 18964 | |||| | || || |||| | | | ||| ||| ||| ||| || | Sbjct 1766840 TGCCTGAACTTTCTCCACACTTAGCTTTTTCTTCAACAAGCTGT----ACAGCAAGCAGG 1766785 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||||||||| || || || || || | |||||| || || || || ||||| || | Sbjct 1766784 CAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCCGG 1766725 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATA 19083 |||| | || | ||||| | ||||||||| | |||| || |||||| ||||| || Sbjct 1766724 GCATTAACCCGCGCTTTTTCAGCCAGAATAT-GGAGCAGAAGCTTCCAGAGAAGAAAATC 1766666 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT-TATGAAT 19142 ||||| || || ||||||| |||||||| | || || | | | || Sbjct 1766665 CCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGC----GAAGGATTCTGCTCCGTCGAT 1766610 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| || |||||||| || ||||| || ||||| || || ||||| || | || Sbjct 1766609 CCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCGCGGAA 1766550 Query 19203 TAGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || | | || | || | ||||| | || | |||| | | ||||| Sbjct 1766549 GAGGTGGGATTTAAG---GTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATACAT 1766493 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| || || || ||||| || || || || || ||||| || | || |||| || Sbjct 1766492 TTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCCTCTGCTAC 1766433 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | |||||| || | | |||||| || || || ||| || || Sbjct 1766432 CTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCGTCAGAGGCGGC 1766373 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA--ATGTATT-CCA 19436 || || || | | || | || || |||| || || | ||| | |||| || ||| Sbjct 1766372 GAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGGATGTTTTCCCA 1766313 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 | | || | || | ||| |||||||| | ||||| || || || || ||||| Sbjct 1766312 GTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAGGCTTCAGCTTT 1766253 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATT 19556 || ||||| | ||| || | |||||| || || || ||| ||||||| | || Sbjct 1766252 CTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAATCTATCTGGGTT 1766193 Query 19557 TTCTTTAAGAA 19567 ||| | |||| Sbjct 1766192 TTCGGTGAGAA 1766182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561558903013680