Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq52 289 8e-74 seq119 168 2e-37 seq1508 167 7e-37 seq219 167 7e-37 seq1 122 3e-23 >seq52 Length=1114353 Score = 289 bits (320), Expect = 8e-74 Identities = 500/721 (69%), Gaps = 4/721 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || | | ||| |||||||| || | |||||||| || || | Sbjct 279554 TTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 279495 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| | |||| | | || ||| | ||| ||||| | |||||||| || | || Sbjct 279494 ATGATCTCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTACTCC 279436 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || |||||||| || || | |||||||| || Sbjct 279435 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 279376 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || | || || | | || | |||| || || || | || ||||| || || Sbjct 279375 TATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAAT 279316 Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 |||||||| |||| | | || |||||| |||||||||| || || ||| |||| ||| Sbjct 279315 ATGGGAAGC-GGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTG 279257 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| ||| || | |||||||||| || | Sbjct 279256 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 279197 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | ||||| ||| | || ||||| |||||||||| | || ||| | | | ||| | Sbjct 279196 GTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTG 279137 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || |||| ||||| | ||| |||||| |||||||| | | Sbjct 279136 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAA 279077 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||||||||| ||| ||||||||| | ||||||| || || | || || || ||||||| Sbjct 279076 TCTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACC 279017 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| ||||| | ||| || |||||||| | || || ||||||||| | Sbjct 279016 CATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATG 278957 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| ||||| | ||| ||||| ||| | | | || ||| | | Sbjct 278956 GTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAAG 278897 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || || ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 278896 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 278837 Query 26520 G 26520 | Sbjct 278836 G 278836 >seq119 Length=805478 Score = 168 bits (186), Expect = 2e-37 Identities = 227/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 || || ||||| | ||| || |||||||| || ||||| || || || ||||| |||| Sbjct 240439 TTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 240498 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587 || || || ||||| ||||| || ||| |||||| | || ||||| | ||| ||||| Sbjct 240499 ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGG 240558 Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 || || || || || ||| | || || | ||||| | || || | || || ||||| Sbjct 240559 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTCAAGTTAAAT 240618 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707 ||||| || || ||||| || ||||| ||| | | || |||| ||| |||||| Sbjct 240619 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 240678 Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767 ||| | | ||||| ||||||| | | |||||||||| || ||||||||||||||| Sbjct 240679 GATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAATGCTCATAAC 240738 Query 26768 TTTCCACTTGACTTAG 26783 || || || ||| ||| Sbjct 240739 TTCCCTCTAGACCTAG 240754 >seq1508 Length=419047 Score = 167 bits (184), Expect = 7e-37 Identities = 235/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 272756 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 272697 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | |||||||| || || || Sbjct 272696 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCC 272638 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || |||||||| || || | |||||||| || Sbjct 272637 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 272578 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || ||||| || || Sbjct 272577 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 272518 Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || |||||| |||||||||| || || ||| |||| ||| Sbjct 272517 CTGGGAAGC-GGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTG 272459 Query 26100 TCTTCCACTTCTTAATAGGAGTAGC 26124 | | ||||||||| | || ||||| Sbjct 272458 TTCTACACTTCTTACTTGGTGTAGC 272434 >seq219 Length=449544 Score = 167 bits (184), Expect = 7e-37 Identities = 235/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 176449 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 176390 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | |||||||| || || || Sbjct 176389 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCC 176331 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || |||||||| || || | |||||||| || Sbjct 176330 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAA 176271 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || ||||| || || Sbjct 176270 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 176211 Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || |||||| |||||||||| || || ||| |||| ||| Sbjct 176210 CTGGGAAGC-GGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTG 176152 Query 26100 TCTTCCACTTCTTAATAGGAGTAGC 26124 | | ||||||||| | || ||||| Sbjct 176151 TTCTACACTTCTTACTTGGTGTAGC 176127 >seq1 Length=3292865 Score = 122 bits (134), Expect = 3e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 || || || || || ||| | || || | ||||| | || ||||| || ||| ||||| Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707 ||||| || || ||||| || ||||| ||| | | || |||| ||| |||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767 ||| | | ||||| |||||||| || | ||||||||||| || ||||||||||||||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 26768 TTTCCACTTGACTTAGC 26784 || || || ||| |||| Sbjct 1433604 TTCCCTCTAGACCTAGC 1433588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146590038169488