Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq52 327 3e-85 seq119 219 1e-52 seq1508 150 5e-32 seq219 150 5e-32 seq1 107 6e-19 >seq52 Length=1114353 Score = 327 bits (362), Expect = 3e-85 Identities = 492/698 (70%), Gaps = 1/698 (0%) Strand=Plus/Plus Query 36231 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAAT 36290 ||||||| ||| || |||||||| || || || ||||| || ||||| ||||| |||||| Sbjct 278831 AGTCTCCAAAA-TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAAT 278889 Query 36291 TTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACA 36350 | || || | || ||||||| || ||||| | ||| | ||||| || Sbjct 278890 CTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACC 278949 Query 36351 AGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATA 36410 | || ||||||||| |||| | ||||||||||| || | ||||| | ||| Sbjct 278950 AAGGAACCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATG 279009 Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 || || || ||||||||||| |||| || ||||| || | || |||||| |||||| | Sbjct 279010 TGAAATGGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTA 279069 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 || || || | ||||||||||||||||| || | ||||| || | ||||||| ||| Sbjct 279070 CCAGAGATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAG 279129 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 || |||||| || ||||||| || || ||||| || ||| ||||| || | |||| Sbjct 279130 AAAACAGCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATA 279189 Query 36591 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAG 36650 ||||| | ||||||||||||| | || |||| ||| | | ||||| | ||| Sbjct 279190 CCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAG 279249 Query 36651 TGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCT 36710 || | ||||| |||| ||| || || || || ||||||||||| || | | ||| ||| Sbjct 279250 TGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCT 279309 Query 36711 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAG 36770 ||||| ||||| || ||||| | || || || | || | || | || || || | Sbjct 279310 TCCCATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAA 279369 Query 36771 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 36830 || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||||| Sbjct 279370 ATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCT 279429 Query 36831 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 36890 || ||||| | ||||| || || || | |||| | | ||| || || | | || | Sbjct 279430 ACTGGAGGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGAG 279489 Query 36891 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||||| | || |||||||| || | || || ||||| Sbjct 279490 ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 279527 >seq119 Length=805478 Score = 219 bits (242), Expect = 1e-52 Identities = 343/491 (70%), Gaps = 0/491 (0%) Strand=Plus/Minus Query 36342 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 36401 ||||| ||||| || ||||||||| |||| | || |||||||| || | ||| Sbjct 180033 GAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTACA 179974 Query 36402 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 36461 || | ||| || || | ||||||||||| ||||| || ||||| || |||| || ||| Sbjct 179973 CCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAAG 179914 Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521 |||||||| | || || || ||||||||||||||||| | | ||||| | | ||| Sbjct 179913 TTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGGG 179854 Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 36581 |||| ||||| |||||| | | ||||||| || || ||||| || ||| || | Sbjct 179853 TAGATCAAGAAAACAGCAGTAGGTACTGCAACTGGAGCGGAATATGCAACAGCAATATAA 179794 Query 36582 GGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCA 36641 || | |||||||| | ||||||||||||| | | |||| ||| | | |||| Sbjct 179793 GGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCA 179734 Query 36642 ATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGG 36701 | | ||||| | ||||| ||| ||| || || || || ||||||||||| || | Sbjct 179733 AGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAACC 179674 Query 36702 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT 36761 | || |||||||| ||||| || ||||| || || || || | || | || Sbjct 179673 GATGTCGCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAATAATG 179614 Query 36762 GCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 36821 || | || || || || |||| || |||| | ||| || ||||| |||||||||||| Sbjct 179613 GCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAATACCA 179554 Query 36822 TCTATATCCAC 36832 || ||||| || Sbjct 179553 TCAATATCAAC 179543 Score = 158 bits (174), Expect = 4e-34 Identities = 230/325 (71%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 35974 CTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 36033 ||||||| || |||||||| || || ||||| ||||||||||||| ||| | | || | Sbjct 240754 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAG 240695 Query 36034 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 36093 |||||||| || ||||||||||| | || | || | |||||| || || | Sbjct 240694 GACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 240635 Query 36094 GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCC 36153 | ||||| || || || || | || ||| | ||||| | || | ||| |||| || Sbjct 240634 GGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACC 240575 Query 36154 ATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGC 36213 | || | || ||||||||||| | |||||| |||||| || || || || | Sbjct 240574 AAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAAC 240515 Query 36214 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCT 36273 ||||||| |||||||| | || ||||| || |||||||| || || || ||||| || | Sbjct 240514 TAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTT 240455 Query 36274 CTTCTTCTTGGCCGAATTTATATCC 36298 || | ||||| |||||| | || || Sbjct 240454 CTCCCTCTTGACCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 150 bits (166), Expect = 5e-32 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| |||| ||| || || || || ||||||||||| || | | ||| Sbjct 272449 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 272508 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||||||||| || ||||| | || || || || | || | || || || Sbjct 272509 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 272568 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 272569 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 272628 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 272629 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 272688 Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 272689 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 272748 Query 36948 TCACATAA 36955 | ||| || Sbjct 272749 TTACAGAA 272756 >seq219 Length=449544 Score = 150 bits (166), Expect = 5e-32 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| |||| ||| || || || || ||||||||||| || | | ||| Sbjct 176142 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 176201 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||||||||| || ||||| | || || || || | || | || || || Sbjct 176202 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 176261 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 176262 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 176321 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 176322 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 176381 Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 176382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 176441 Query 36948 TCACATAA 36955 | ||| || Sbjct 176442 TTACAGAA 176449 Score = 93.3 bits (102), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 36770 GATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 36829 ||| ||||| |||| || |||| | ||| || ||||| |||||||||||||| ||||| Sbjct 175011 GATTATGTTTTTTCG-TAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATC 175069 Query 36830 CACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGG 36889 || ||||| ||||||| || || || | |||| | | ||| || || | | ||| Sbjct 175070 TACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGG 175129 Query 36890 GATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTC 36949 |||||| | || |||||||| || | || || ||||| | || || || | ||| | Sbjct 175130 GATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATT 175189 Query 36950 ACATAA 36955 ||| || Sbjct 175190 ACAGAA 175195 >seq1 Length=3292865 Score = 107 bits (118), Expect = 6e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 1433584 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1433643 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 1433644 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 1433703 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 || || ||||| || || || || | || ||||||||||| Sbjct 1433704 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 1433745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150314573510748