Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq52 354 2e-93 seq119 242 1e-59 seq1508 170 6e-38 seq219 170 6e-38 seq1 116 1e-21 >seq52 Length=1114353 Score = 354 bits (392), Expect = 2e-93 Identities = 519/728 (71%), Gaps = 7/728 (1%) Strand=Plus/Plus Query 5453 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAAT 5512 ||||||| ||| || |||||||| || || || ||||| |||||||||||||| |||||| Sbjct 278831 AGTCTCCAAAA-TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAAT 278889 Query 5513 TTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACA 5572 | || || | || ||| | || ||||| | ||| | |||||| || Sbjct 278890 CTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACC 278949 Query 5573 AGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATG 5632 | |||||||||||| || | | ||||||||||| ||| | ||||| | |||| Sbjct 278950 AAGGAACCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATG 279009 Query 5633 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTA 5692 || || || ||||||||||| |||| || |||||||||| | ||||||||| ||| || Sbjct 279010 TGAAATGGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTA 279069 Query 5693 CCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAA 5752 |||||||| | ||||||||||||||| || |||| || |||| ||||| | || Sbjct 279070 CCAGAGATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAG 279129 Query 5753 AATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCAT 5811 || || | |||| || | ||||| || || |||||||| || |||||| || ||||| Sbjct 279130 AAAACAGCAGTA-GCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCAT 279188 Query 5812 TCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAA 5871 |||| | | ||||||||||||| | || |||| ||| || | ||||| | ||| Sbjct 279189 ACCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAA 279248 Query 5872 GTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCT 5929 ||| | || | |||| || || || |||||||| | ||| ||||| | ||| || Sbjct 279249 GTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGAT--GCC 279306 Query 5930 GCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCT 5989 |||||||| || ||||| ||||| ||||| || || | || | || | || ||| || Sbjct 279307 GCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCC 279366 Query 5990 GATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATG 6049 | || || || ||||| || ||||||||||| | || |||||||| || || || || Sbjct 279367 AAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 279426 Query 6050 TCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCG 6109 || ||||| || | ||| | ||| |||| |||||| ||| |||||| || || | | Sbjct 279427 TCTACTGGAGGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 279486 Query 6110 GGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAG 6169 | ||||| || ||||||||||| || | || || ||||| | || | || | ||| Sbjct 279487 GAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAATGTTGGTTATCCAA 279546 Query 6170 TCACAGAA 6177 | |||||| Sbjct 279547 TTACAGAA 279554 >seq119 Length=805478 Score = 242 bits (268), Expect = 1e-59 Identities = 426/618 (69%), Gaps = 18/618 (3%) Strand=Plus/Minus Query 5563 AGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAAC 5622 |||||| ||||| |||||||||||| || | | || |||||||| |||| || Sbjct 180034 AGAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTAC 179975 Query 5623 ACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAA 5682 ||| | |||||| || | ||||||||||| ||||| || ||||||||||| | || ||| Sbjct 179974 ACCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAA 179915 Query 5683 GTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGG 5742 ||| |||||| | ||||| || ||||||||||||||| | |||| || ||| || Sbjct 179914 GTTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGG 179855 Query 5743 GTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCC 5801 ||| | || || || | |||||| | | ||||| || || |||||||| || ||| Sbjct 179854 GTAGATCAAGAAAACAGCAGTAGG-TACTGCAACTGGAGCGGAATATGCAACAGCAATAT 179796 Query 5802 ATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATAC 5861 | || ||||| ||||| | | ||||||||||||| | | |||| ||| || | || Sbjct 179795 AAGGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACAC 179736 Query 5862 CAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA 5921 ||| | |||||| | || | ||| || || || |||||||| | ||| ||||| | Sbjct 179735 CAAGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAA 179676 Query 5922 --GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 ||| | |||||||| || ||||| ||||| |||| || || || | || | Sbjct 179675 CCGAT--GTCGCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAAT 179618 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| | || || || || |||| || ||||||||||| | || |||||||| || Sbjct 179617 AATGGCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAAT 179558 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || | || | | ||| |||| || || ||| |||||| || Sbjct 179557 ACCATCAATAT------------CAACAATGAAGGCTATAATGGATACAGAAGTTGCAGT 179510 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCT 6159 || | | || ||||| | |||||||||| || | || || ||||| | ||| | Sbjct 179509 CAATAAGGTAGGGATCATAGAAACACCAAACCGTCCAATGTAAAGACGGTTTTCAGTGTT 179450 Query 6160 AGTAACCCAGTCACAGAA 6177 || | ||| | |||||| Sbjct 179449 GGTTATCCAATTACAGAA 179432 >seq1508 Length=419047 Score = 170 bits (188), Expect = 6e-38 Identities = 231/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | |||| || || || |||||||| | ||| ||||| Sbjct 272439 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATC 272498 Query 5920 GA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGT 5977 | ||| || ||||||||||| ||||| ||||| ||||| || || || | || Sbjct 272499 AACCGAT--GCCGCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGA 272556 Query 5978 ACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGT 6037 | || ||| || || || || || ||||| || ||||||||||| | || |||||||| Sbjct 272557 ATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGA 272616 Query 6038 ATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCG 6097 || || || || || ||||| || ||||| | ||| |||| |||||| ||| |||||| Sbjct 272617 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCA 272676 Query 6098 GTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTG 6157 || || | | || ||||| || ||||||||||| || | || || ||||| | ||| Sbjct 272677 GTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTG 272736 Query 6158 CTAGTAACCCAGTCACAGAA 6177 || || | ||| | |||||| Sbjct 272737 CTGGTTATCCAATTACAGAA 272756 >seq219 Length=449544 Score = 170 bits (188), Expect = 6e-38 Identities = 231/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | |||| || || || |||||||| | ||| ||||| Sbjct 176132 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATC 176191 Query 5920 GA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGT 5977 | ||| || ||||||||||| ||||| ||||| ||||| || || || | || Sbjct 176192 AACCGAT--GCCGCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGA 176249 Query 5978 ACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGT 6037 | || ||| || || || || || ||||| || ||||||||||| | || |||||||| Sbjct 176250 ATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGA 176309 Query 6038 ATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCG 6097 || || || || || ||||| || ||||| | ||| |||| |||||| ||| |||||| Sbjct 176310 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCA 176369 Query 6098 GTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTG 6157 || || | | || ||||| || ||||||||||| || | || || ||||| | ||| Sbjct 176370 GTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTG 176429 Query 6158 CTAGTAACCCAGTCACAGAA 6177 || || | ||| | |||||| Sbjct 176430 CTGGTTATCCAATTACAGAA 176449 Score = 114 bits (126), Expect = 4e-21 Identities = 137/185 (74%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 5993 ATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCG 6052 || ||||| |||| || ||||||||||| | || |||||||| || || || || || Sbjct 175012 ATTATGTTTTTTCG-TAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCT 175070 Query 6053 ACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGT 6112 ||||| || ||||| | ||| |||| |||||| ||| |||||| || || | | || Sbjct 175071 ACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGG 175130 Query 6113 ATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCA 6172 ||||| || ||||||||||| || | || || ||||| | ||||| || | ||| | | Sbjct 175131 ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATTA 175190 Query 6173 CAGAA 6177 ||||| Sbjct 175191 CAGAA 175195 >seq1 Length=3292865 Score = 116 bits (128), Expect = 1e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 1433584 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1433643 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 1433644 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 1433703 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 || || ||||| || || || || | || ||||||||||| Sbjct 1433704 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 1433745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152507733376932