Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq52 318 2e-82 seq119 210 7e-50 seq1508 154 4e-33 seq219 154 4e-33 seq1 105 2e-18 >seq52 Length=1114353 Score = 318 bits (352), Expect = 2e-82 Identities = 490/698 (70%), Gaps = 1/698 (0%) Strand=Plus/Plus Query 25711 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAAT 25770 ||||||| ||| || |||||||| || || || ||||| || ||||| ||||| |||||| Sbjct 278831 AGTCTCCAAAA-TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAAT 278889 Query 25771 TTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACA 25830 | || || | || ||||||| || ||||| | ||| | ||||| || Sbjct 278890 CTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACC 278949 Query 25831 AGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATA 25890 | || ||||||||| |||| | ||||||||||| || | ||||| | ||| Sbjct 278950 AAGGAACCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATG 279009 Query 25891 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 25950 || || || ||||||||||| |||| || ||||| || | || |||||| |||||| | Sbjct 279010 TGAAATGGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTA 279069 Query 25951 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 26010 || || || | ||||||||||||||||| || | ||||| || | ||||||| ||| Sbjct 279070 CCAGAGATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAG 279129 Query 26011 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATG 26070 || |||||| || ||||||| || || ||||| || ||| ||||| || | ||| Sbjct 279130 AAAACAGCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATA 279189 Query 26071 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAG 26130 ||||| | ||||||||||||| | || |||| ||| | | || | | ||| Sbjct 279190 CCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAG 279249 Query 26131 TGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCT 26190 || | ||||| |||| ||| || ||||| || || |||||||| || | | ||| ||| Sbjct 279250 TGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCT 279309 Query 26191 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAG 26250 ||||| ||||| || ||||| | || || || |||| | || | || || || | Sbjct 279310 TCCCATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAA 279369 Query 26251 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 26310 || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||||| Sbjct 279370 ATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCT 279429 Query 26311 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 26370 || ||||| | ||||| || || || | |||| | | ||| || || | | || | Sbjct 279430 ACTGGAGGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGAG 279489 Query 26371 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||||| | || |||||||| || | || || ||||| Sbjct 279490 ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 279527 >seq119 Length=805478 Score = 210 bits (232), Expect = 7e-50 Identities = 341/491 (69%), Gaps = 0/491 (0%) Strand=Plus/Minus Query 25822 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 25881 ||||| ||||| || ||||||||| |||| | || |||||||| || | ||| Sbjct 180033 GAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTACA 179974 Query 25882 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 25941 || | ||| || || | ||||||||||| ||||| || ||||| || |||| || ||| Sbjct 179973 CCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAAG 179914 Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| | || || || ||||||||||||||||| | | ||||| | | ||| Sbjct 179913 TTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGGG 179854 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| |||||| | | ||||||| || || ||||| || ||| || | Sbjct 179853 TAGATCAAGAAAACAGCAGTAGGTACTGCAACTGGAGCGGAATATGCAACAGCAATATAA 179794 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCG 26121 || | ||| |||| | ||||||||||||| | | |||| ||| | | || Sbjct 179793 GGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCA 179734 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| | ||||| ||| ||| || ||||| || || |||||||| || | Sbjct 179733 AGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAACC 179674 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT 26241 | || |||||||| ||||| || ||||| || || || ||| | || | || Sbjct 179673 GATGTCGCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAATAATG 179614 Query 26242 GCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 26301 || | || || || || |||| || |||| | ||| || ||||| |||||||||||| Sbjct 179613 GCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAATACCA 179554 Query 26302 TCTATATCCAC 26312 || ||||| || Sbjct 179553 TCAATATCAAC 179543 Score = 163 bits (180), Expect = 9e-36 Identities = 231/325 (71%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 25454 CTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 25513 ||| ||| ||||||||||| || || ||||| ||||||||||||| ||| | | || | Sbjct 240754 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAG 240695 Query 25514 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 25573 |||||||| || ||||||||||| | || | || | |||||| || || | Sbjct 240694 GACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 240635 Query 25574 GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCC 25633 | ||||| || || || || | || ||| | ||||| | || | ||| |||| || Sbjct 240634 GGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACC 240575 Query 25634 ATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGC 25693 | || | || ||||||||||| | |||||| |||||| ||| || || || | Sbjct 240574 AAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAAC 240515 Query 25694 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCT 25753 ||||||| |||||||| | || ||||| || |||||||| || || || ||||| || | Sbjct 240514 TAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTT 240455 Query 25754 CTTCTTCTTGGCCGAATTTATATCC 25778 || | ||||| |||||| | || || Sbjct 240454 CTCCCTCTTGACCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 154 bits (170), Expect = 4e-33 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| |||| ||| || ||||| || || |||||||| || | | ||| Sbjct 272449 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 272508 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||||||||| || ||||| | || || || ||| | || | || || || Sbjct 272509 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 272568 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 272569 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 272628 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 272629 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 272688 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 272689 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 272748 Query 26428 TCACATAA 26435 | ||| || Sbjct 272749 TTACAGAA 272756 >seq219 Length=449544 Score = 154 bits (170), Expect = 4e-33 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| |||| ||| || ||||| || || |||||||| || | | ||| Sbjct 176142 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 176201 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||||||||| || ||||| | || || || ||| | || | || || || Sbjct 176202 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 176261 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 176262 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 176321 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 176322 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 176381 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 176382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 176441 Query 26428 TCACATAA 26435 | ||| || Sbjct 176442 TTACAGAA 176449 Score = 93.3 bits (102), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 26250 GATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATC 26309 ||| ||||| |||| || |||| | ||| || ||||| |||||||||||||| ||||| Sbjct 175011 GATTATGTTTTTTCG-TAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATC 175069 Query 26310 CACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGG 26369 || ||||| ||||||| || || || | |||| | | ||| || || | | ||| Sbjct 175070 TACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGG 175129 Query 26370 GATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTC 26429 |||||| | || |||||||| || | || || ||||| | || || || | ||| | Sbjct 175130 GATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATT 175189 Query 26430 ACATAA 26435 ||| || Sbjct 175190 ACAGAA 175195 >seq1 Length=3292865 Score = 105 bits (116), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 1433588 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1433647 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 1433648 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 1433707 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 || ||||| || || || || | || ||||||||||| Sbjct 1433708 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 1433745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151852343037912