Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1099 114 1e-20 seq810 114 1e-20 seq865 98.7 8e-16 >seq1099 Length=206994 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| || | ||| | ||| || || ||| || || || |||||||| | Sbjct 75355 CCACCCCTTAGTCGAAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCTGCA 75296 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| || |||||||||| | ||| ||||| | |||| Sbjct 75295 AGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTCTGCTGATCTGGGGGA 75236 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || ||| | | | ||||| ||| ||| Sbjct 75235 ATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATTGTGTCTGAGCTCTCAACC 75176 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| || || || |||||||| || ||||| ||||||||| Sbjct 75175 TCCAGAGTAATAGTCTTCCCAGTCAAAGTCTTGACAAATATCTGCATC 75128 >seq810 Length=562993 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | ||||| || || || |||||| || ||||||||||| | Sbjct 115078 CCTCCCCTCAAACGAAGAACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCA 115137 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || |||| |||||| ||||| || |||| | ||| || || | |||| Sbjct 115138 AGAGTCCTCCCATCCTCCAGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGA 115197 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | ||||| ||| ||| Sbjct 115198 ATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACC 115257 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||| || || ||||||||||| || || || |||||||||||| Sbjct 115258 TCCAACGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAAATCTGCATC 115305 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| | | || | || || | ||| Sbjct 114874 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGC 114933 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| || ||| || || | ||| | ||||||||||| ||||| Sbjct 114934 TTCCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTA 114993 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||| | || || || ||||| ||| Sbjct 114994 GCCTTAACATTATCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTC 115053 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 115054 AAGGTCTTCACAAAAATCTGCAT 115076 >seq865 Length=406355 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | ||||||||| || || ||| ||||| ||||||||||| | Sbjct 5875 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 5934 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || || | |||||| || ||||| ||||| | ||| || || | ||| Sbjct 5935 AGAGTCCTCCCATCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 5994 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | ||||| ||| ||| Sbjct 5995 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACC 6054 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || ||||| || || || ||||||||||| Sbjct 6055 TCCAAGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| |||| | | | || | || || Sbjct 6121 ACCAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCA 6180 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| | ||| || || | ||| | ||| |||||||| | Sbjct 6181 AGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGA 6240 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| ||| ||||||| ||||| || || Sbjct 6241 ATCTTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTG 6300 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| ||||| || |||||||||||| Sbjct 6301 CCAGTCAAGGTTTTGACGAAAATCTGCATC 6330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380574254812626