Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq52 369 4e-97 seq119 264 1e-65 seq1508 161 1e-34 seq219 161 1e-34 seq1 149 7e-31 >seq52 Length=1114353 Score = 369 bits (408), Expect = 4e-97 Identities = 514/719 (71%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||| ||| | ||| |||| || || | || | || ||||| ||||| |||||| Sbjct 279551 TGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 279492 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 ||| || ||| | | ||| | || || || || || |||||||| | |||||| Sbjct 279491 ATCTCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCA 279432 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || || || || || || Sbjct 279431 GTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATT 279372 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || | ||||| | |||||| ||| | ||||| || | ||||| ||||| || ||| Sbjct 279371 ATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGG 279312 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||||||||| || |||||||| |||| |||| | || | Sbjct 279311 GAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTA 279252 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGC 162858 |||||| | | || | ||| | | | |||||| ||||||||||| || ||| Sbjct 279251 CACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 279195 Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT 162918 |||||||||| |||||||| ||||||||| || || ||||| | | || ||| Sbjct 279194 CTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCT 279135 Query 162919 GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATT 162978 || |||||| |||| || |||||||||| || ||||| | |||||||| | || Sbjct 279134 GTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATC 279075 Query 162979 TCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCC 163038 ||||||| ||| |||| ||| | | ||||| || ||| |||||||||| |||||||| Sbjct 279074 TCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACCCA 279015 Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | || || | |||||||||||||| || || |||||||||||||| ||| Sbjct 279014 TTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGT 278955 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 || | || |||||| | | || || ||||| || | | || || || | ||| Sbjct 278954 TCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAAGGT 278895 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGG 163217 || | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 278894 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 264 bits (292), Expect = 1e-65 Identities = 372/518 (72%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 |||||||| |||||||| | |||||||| | || || || || || | || || || Sbjct 179543 GTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATATT 179602 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || || | ||| | |||||| ||| ||||| || ||||| ||||| || ||| Sbjct 179603 ATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATGG 179662 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || | ||||||||||||| || |||||||| |||| ||| | || | Sbjct 179663 GAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCTA 179722 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGC 162858 |||||| | | || | ||| | | | |||| | ||||||||||| || ||| Sbjct 179723 CACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGT 179779 Query 162859 TTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAG--CATTC- 162915 ||||||||||| |||| || ||||||||| || || ||||| ||||| | | | Sbjct 179780 TTAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGT---TGCAGTACCTACT 179836 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| || ||| |||||| | | ||||| | |||||||| || Sbjct 179837 GCTGTTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGA 179896 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || || | |||||| |||| || | || ||||| || |||||||||||||| |||||| Sbjct 179897 ATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 179956 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 | || || ||| | || || | ||||||||||| || || || |||||||||||||| Sbjct 179957 TCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 180016 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTAC 163133 ||||| ||||| |||||| | | ||||| ||||| || Sbjct 180017 GGTTCCCTTGTAACTTCTAGTTTGATCAGGGAAACAAC 180054 Score = 228 bits (252), Expect = 9e-55 Identities = 251/333 (75%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||| | ||| ||||| || || || ||||||||||| || ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 ||||| ||||||||||| ||||| |||||||||||| ||||| | ||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | || ||||| ||||| | ||| | ||||| | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392 || | || |||||||| ||||||||||| || ||||| |||| || || ||| Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATT 240666 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| |||||| ||||| | | |||| |||| |||||||||| || ||| Sbjct 240667 AATACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGT 240726 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| |||||||| || ||||| | |||| Sbjct 240727 AATGCTCATAACTTCCCTCTAGACCTAGATGCT 240759 >seq1508 Length=419047 Score = 161 bits (178), Expect = 1e-34 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 272714 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATA 272655 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 272654 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCT 272595 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || || || || || || ||||| | |||||| ||| ||||| || Sbjct 272594 CTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGG 272535 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| ||||| ||||||||||| ||| | ||||||||||||| || |||||||| Sbjct 272534 TTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGT 272475 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTC 162807 |||| |||| | || | |||||| Sbjct 272474 CCTTATGAACTAATTGTTCTACACTTC 272448 >seq219 Length=449544 Score = 161 bits (178), Expect = 1e-34 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 176407 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATA 176348 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 176347 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCT 176288 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || || || || || || ||||| | |||||| ||| ||||| || Sbjct 176287 CTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGG 176228 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| ||||| ||||||||||| ||| | ||||||||||||| || |||||||| Sbjct 176227 TTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGT 176168 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTC 162807 |||| |||| | || | |||||| Sbjct 176167 CCTTATGAACTAATTGTTCTACACTTC 176141 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 175153 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATA 175094 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 175093 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCT 175034 Query 162661 CTTCTCTATGGTAACAACATCATC 162684 || || || | || ||||| ||| Sbjct 175033 CTACTTTA-CGAAAAAACATAATC 175011 >seq1 Length=3292865 Score = 149 bits (164), Expect = 7e-31 Identities = 158/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 || ||||| || | || ||||| ||||| | ||| | |||||||| |||||| | Sbjct 1433787 TTTCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTA 1433728 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||||||||| || ||||| |||| || || ||| |||| Sbjct 1433727 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACT 1433671 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| |||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 1433670 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 1433611 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || |||||||| || ||||| |||||| Sbjct 1433610 CATAACTTCCCTCTAGACCTAGCTGCT 1433584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552543730967280