Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq66 165 2e-35 seq40 127 4e-24 >seq66 Length=1001823 Score = 165 bits (182), Expect = 2e-35 Identities = 385/572 (67%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| |||||| ||||| | ||| | |||||||| || || ||| |||| ||| Sbjct 953111 TACAGCAAGCAGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAG 953052 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | || ||||| | ||| | || |||||||||||| || | |||| || Sbjct 953051 AAGGTTAATCCGGGCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCG 952992 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| || || || ||||| || | |||||||| | || || ||| Sbjct 952991 GAGAAGAAGATCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAA----GCATTC 952936 Query 48302 TTGTCTGAGA-TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | | |||| || ||||| || || |||||||| | ||| || || ||||| Sbjct 952935 TGCGCCGTCAATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTC 952876 Query 48361 TATGGCCCGGAAGAGCTTC---TTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || |||||||| | || ||| || ||| | ||||| || || Sbjct 952875 GATTGCTCGGAAGAGGTGGGATTTAAGCTC---TGAGTCTTTGATGTAGGTTTCTAGGAG 952819 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 | |||||| || ||||| | || || || || || ||||||||||||||||| | Sbjct 952818 GAGAGAGTACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCG 952759 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 |||||| ||||| || ||| | |||||| || || ||||| || |||||| | Sbjct 952758 CGCCTCAGCAACCTGGACCTCTTTCATGAATCT-GCCGGCGAGATTTTCTAGGACTATGC 952700 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || |||||||| |||| ||| | | || || |||||| | ||||| Sbjct 952699 CGTCGGAGGCGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGA 952640 Query 48597 GAGC--ATTCC--AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAG 48652 | || |||| | | || ||||| ||||| ||||||||| | ||||||||| Sbjct 952639 GCGCGGTTTCCCAATGACGGT-TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAG 952581 Query 48653 GACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || || |||||||| |||| || Sbjct 952580 GAGGCTTCAGCCTTCTTGTACATCTCCCAGAT 952549 >seq40 Length=1826671 Score = 127 bits (140), Expect = 4e-24 Identities = 380/580 (66%), Gaps = 16/580 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||||||||| || | ||| | ||||| || || || | | |||| ||| Sbjct 1766797 TACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAG 1766738 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | || ||||| | ||| | || ||| |||||||| || | ||| ||| Sbjct 1766737 AAGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCA 1766678 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || ||||| || | || || || |||| || ||| Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGA----TTC 1766622 Query 48302 TTGTCTG-AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | || | |||||| || ||||| ||||| |||||||| | || || || ||||| Sbjct 1766621 TGCTCCGTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTC 1766562 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCA---CCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || |||||||| | | | | | | | ||| | ||||| | || Sbjct 1766561 GATTGCGCGGAAGAG---GTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAG 1766505 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 | ||||| || ||||| | || || || ||||| ||||| ||||||||||| | Sbjct 1766504 GAGGGAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCG 1766445 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 ||||| ||||| || ||| | |||||| ||| || ||||| || ||| || | Sbjct 1766444 CGCCTCTGCTACCTGGACGTCTTTCATGAATCT-TCCGGCGAGATTTTCGAGGACGATGC 1766386 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || |||||||| |||| || | | ||| || |||||| | ||||| Sbjct 1766385 CGTCAGAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGA 1766326 Query 48597 GAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653 | || |||| | ||| | || || ||||||||| | |||||||||| Sbjct 1766325 GGATGTTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGG 1766266 Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| |||||||| |||| || | ||||| Sbjct 1766265 AGGCTTCAGCTTTCTTGTACATTTCCCAGATTTGTGGATA 1766226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930621504750080