Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq66 165 2e-35
seq40 127 4e-24
>seq66
Length=1001823
Score = 165 bits (182), Expect = 2e-35
Identities = 385/572 (67%), Gaps = 18/572 (3%)
Strand=Plus/Minus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
|| |||| |||||| ||||| | ||| | |||||||| || || ||| |||| |||
Sbjct 953111 TACAGCAAGCAGGCGAAGTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAG 953052
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
||| | || ||||| | ||| | || |||||||||||| || | |||| ||
Sbjct 953051 AAGGTTAATCCGGGCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCG 952992
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301
||||||||||| || || || ||||| || | |||||||| | || || |||
Sbjct 952991 GAGAAGAAGATCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAA----GCATTC 952936
Query 48302 TTGTCTGAGA-TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360
| | | | |||| || ||||| || || |||||||| | ||| || || |||||
Sbjct 952935 TGCGCCGTCAATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTC 952876
Query 48361 TATGGCCCGGAAGAGCTTC---TTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417
|| || |||||||| | || ||| || ||| | ||||| || ||
Sbjct 952875 GATTGCTCGGAAGAGGTGGGATTTAAGCTC---TGAGTCTTTGATGTAGGTTTCTAGGAG 952819
Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477
| |||||| || ||||| | || || || || || ||||||||||||||||| |
Sbjct 952818 GAGAGAGTACATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCG 952759
Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536
|||||| ||||| || ||| | |||||| || || ||||| || |||||| |
Sbjct 952758 CGCCTCAGCAACCTGGACCTCTTTCATGAATCT-GCCGGCGAGATTTTCTAGGACTATGC 952700
Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596
| || || || || |||||||| |||| ||| | | || || |||||| | |||||
Sbjct 952699 CGTCGGAGGCGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGA 952640
Query 48597 GAGC--ATTCC--AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAG 48652
| || |||| | | || ||||| ||||| ||||||||| | |||||||||
Sbjct 952639 GCGCGGTTTCCCAATGACGGT-TGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAG 952581
Query 48653 GACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684
|| || || || |||||||| |||| ||
Sbjct 952580 GAGGCTTCAGCCTTCTTGTACATCTCCCAGAT 952549
>seq40
Length=1826671
Score = 127 bits (140), Expect = 4e-24
Identities = 380/580 (66%), Gaps = 16/580 (3%)
Strand=Plus/Minus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
|| |||| ||||||||| || | ||| | ||||| || || || | | |||| |||
Sbjct 1766797 TACAGCAAGCAGGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAG 1766738
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
||| | || ||||| | ||| | || ||| |||||||| || | ||| |||
Sbjct 1766737 AAGGTTAATCCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCA 1766678
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301
|||||||| || || || || ||||| || | || || || |||| || |||
Sbjct 1766677 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGA----TTC 1766622
Query 48302 TTGTCTG-AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360
| || | |||||| || ||||| ||||| |||||||| | || || || |||||
Sbjct 1766621 TGCTCCGTCGATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTC 1766562
Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCA---CCTGCGTCCGCAACATAGGTAGTGAGCAG 48417
|| || |||||||| | | | | | | | ||| | ||||| | ||
Sbjct 1766561 GATTGCGCGGAAGAG---GTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAG 1766505
Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477
| ||||| || ||||| | || || || ||||| ||||| ||||||||||| |
Sbjct 1766504 GAGGGAATACATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAGGCGCG 1766445
Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536
||||| ||||| || ||| | |||||| ||| || ||||| || ||| || |
Sbjct 1766444 CGCCTCTGCTACCTGGACGTCTTTCATGAATCT-TCCGGCGAGATTTTCGAGGACGATGC 1766386
Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596
| || || || || |||||||| |||| || | | ||| || |||||| | |||||
Sbjct 1766385 CGTCAGAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGA 1766326
Query 48597 GAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653
| || |||| | ||| | || || ||||||||| | ||||||||||
Sbjct 1766325 GGATGTTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGG 1766266
Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693
| || ||||| |||||||| |||| || | |||||
Sbjct 1766265 AGGCTTCAGCTTTCTTGTACATTTCCCAGATTTGTGGATA 1766226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930621504750080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |