Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq329 107 2e-18 seq1435 93.3 4e-14 seq37 89.7 4e-13 >seq329 Length=298387 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || | || ||||| |||||||| || ||| |||| Sbjct 180085 ATGCAGATCTTTGTTAAGACCCTTACTGGTAAGACCATTACTCTTGAGGTTGAAACTTCT 180144 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGG-AGTGCCCGTAGATCA 28672 || ||| | | || | ||| || || ||| ||||| || | ||| | | ||||| Sbjct 180145 GACACGATTGAAAATGTTAAGACCAAGATTCACGATAAAGAAGGTATTGCACCT-GATCA 180203 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||| |||||||| || ||||| || || ||| || |||| | || || ||||| Sbjct 180204 ACAAAGACTCATCTTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAA 180263 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || ||||||||||| ||||| | | || |||| ||||| Sbjct 180264 TATTCAAAAGGAGTCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGGGAT 180314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || ||||| || || ||| || ||| Sbjct 179857 ATGCAAATCTTTGTGAAGACACTTACAGGGAAAACAATCACTCTAGAAGTAGAGAGTTCT 179916 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| |||||||| || | || ||||||| Sbjct 179917 GATACAATTGACAATGTTAAGACCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCAA 179976 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || |||||| | || ||| | ||| | || ||||| ||| Sbjct 179977 CAGAGGCTAATCTTTGCTGGTAAACAACTCGAGGATGGAAGAACCCTTGCAGATTACAAC 180036 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 |||||||| ||||| ||||| || Sbjct 180037 ATTCAAAAGGAATCAACTCTCCA 180059 >seq1435 Length=543809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| | ||||||||| || || ||||| |||| || |||||||| ||| ||| ||| Sbjct 91720 TGTCACAATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGA 91779 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 | | || || || | | | | |||| || ||| |||||||||||| | || Sbjct 91780 ATCCTCCGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACC 91839 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || || | || ||||| || || || ||||| || ||| | ||| | ||||| Sbjct 91840 GGACCAGCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGA 91899 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| |||||||| || ||||| || || ||| |||| Sbjct 91900 TTACAACATTCAGAAGGAATCGACCCTTCACTTGGT 91935 >seq37 Length=1785839 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || || ||||| |||| || |||||||| ||| ||| ||| | Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | | |||| || ||| |||||||| || | || || Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | || ||||| || || ||||| ||||||||| | ||| | ||||| || Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || ||||||||||| ||| |||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGT 885910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424999041191298