Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq52 343 4e-90 seq119 221 4e-53 seq1508 168 2e-37 seq219 168 2e-37 seq1 109 2e-19 >seq52 Length=1114353 Score = 343 bits (380), Expect = 4e-90 Identities = 500/700 (71%), Gaps = 5/700 (1%) Strand=Plus/Plus Query 18093 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAAT 18152 ||||||| ||| || |||||||| || || |||||||| || ||||| ||||| || ||| Sbjct 278831 AGTCTCCAAAA-TAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAAT 278889 Query 18153 TTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACA 18212 | || || | || ||| ||| | || ||||| ||||| | ||||| || Sbjct 278890 CTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACC 278949 Query 18213 AGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATA 18272 | || ||||||||| |||| | ||||||||||| || | ||||| | ||| Sbjct 278950 AAGGAACCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATG 279009 Query 18273 TGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTA 18332 || || || ||||||||||| |||| || || ||||||| | ||| || |||||| || Sbjct 279010 TGAAATGGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTA 279069 Query 18333 CCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAG 18391 || || | ||||||||||||||||| || | ||||| || | || || | | || Sbjct 279070 CCAGAGATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAG 279129 Query 18392 AAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 ||| || | || || || |||| ||||| |||||||| |||||| |||||| ||||||| Sbjct 279130 AAA-ACAGCAGTAGCCA-CTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCA 279187 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAA 18510 ||||||| | ||||||||||||| | || ||||| ||| || | || | | | Sbjct 279188 TACCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGA 279247 Query 18511 AGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAG 18570 |||| | ||||| |||| ||| || || || || ||||||||||| || | | ||| | Sbjct 279248 AGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCG 279307 Query 18571 CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTG 18630 ||||||| ||||| || ||||| | || || || |||| | || | || || || Sbjct 279308 CTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCA 279367 Query 18631 ATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGT 18690 | || || || ||||| || |||| | ||| || ||||| |||||||||||||| || | Sbjct 279368 AAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATAT 279427 Query 18691 CAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAG 18750 | || ||||||| ||||| || || || | |||| | | || ||| || || | | || Sbjct 279428 CTACTGGAGGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAG 279487 Query 18751 GGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 |||||| | || |||||||| || | ||| || ||||| Sbjct 279488 AGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 279527 >seq119 Length=805478 Score = 221 bits (244), Expect = 4e-53 Identities = 348/493 (71%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 18263 ||||| ||||| || ||||||||| |||| | || |||||||| || | ||| Sbjct 180033 GAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTACA 179974 Query 18264 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAA 18323 || | ||| || || | ||||||||||| ||||| || || |||||||| | || || Sbjct 179973 CCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAAG 179914 Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||| || || || ||||||||||||||||| | | ||||| | | || Sbjct 179913 TTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGGG 179854 Query 18384 TAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCC 18441 || | | ||||| || | || ||| | |||| ||||| |||||||| |||||| ||| Sbjct 179853 TAGATCAAGAAA-ACAGCAGTAGGTA-CTGCAACTGGAGCGGAATATGCAACAGCAATAT 179796 Query 18442 ACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGC 18501 | ||||||||||||| | ||||||||||||| | | ||||| ||| || | | Sbjct 179795 AAGGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACAC 179736 Query 18502 CGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGA 18561 | | | ||||| | ||||| ||| ||| || || || || ||||||||||| || | Sbjct 179735 CAAGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAA 179676 Query 18562 GGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGA 18621 | || |||||||| ||||| || ||||| || || || ||| | || | | Sbjct 179675 CCGATGTCGCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAATAA 179616 Query 18622 TTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATAC 18681 | || | || || || || |||| || |||| | ||| || ||||| |||||||||| Sbjct 179615 TGGCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAATAC 179556 Query 18682 CATCTATGTCAAC 18694 |||| || ||||| Sbjct 179555 CATCAATATCAAC 179543 Score = 159 bits (176), Expect = 1e-34 Identities = 230/323 (71%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 ||||| |||||||||||||||||||| || |||||||||| | ||||||||| | | Sbjct 240749 TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAGGACGG 240690 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATGGATTGG 17957 || | | |||||||| ||| | || | ||| | | | ||||| |||||| Sbjct 240689 TTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA---GATTGG 240633 Query 17958 TTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCAT 18017 ||||| ||||| ||||| | || ||| | ||||| || || | || |||| ||| Sbjct 240632 TTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACCAA 240573 Query 18018 ATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTA 18077 || | || ||||||||||| |||||||| |||| | | ||||| || ||| Sbjct 240572 ATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTA 240513 Query 18078 GCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCT 18137 ||||| |||||||| | || ||||| || |||||||| || || |||||||| || ||| Sbjct 240512 GCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCT 240453 Query 18138 TCTTCTTGGCCAAATTTATATCC 18160 | ||||| || ||| | || || Sbjct 240452 CCCTCTTGACCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 168 bits (186), Expect = 2e-37 Identities = 222/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| ||| || || || || ||||||||||| || | | ||| Sbjct 272449 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 272508 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||||||||| || ||||| | || || || ||| | || | || || || Sbjct 272509 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 272568 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| || Sbjct 272569 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 272628 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||||||||| || || || | |||| | | || ||| || || | | | Sbjct 272629 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 272688 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | ||| || ||||| | || || || | ||| Sbjct 272689 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 272748 Query 18810 TCACATAA 18817 | ||| || Sbjct 272749 TTACAGAA 272756 >seq219 Length=449544 Score = 168 bits (186), Expect = 2e-37 Identities = 222/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| ||| || || || || ||||||||||| || | | ||| Sbjct 176142 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC 176201 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||||||||| || ||||| | || || || ||| | || | || || || Sbjct 176202 GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCC 176261 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| || Sbjct 176262 GAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATA 176321 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||||||||| || || || | |||| | | || ||| || || | | | Sbjct 176322 TCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTA 176381 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | ||| || ||||| | || || || | ||| Sbjct 176382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAA 176441 Query 18810 TCACATAA 18817 | ||| || Sbjct 176442 TTACAGAA 176449 Score = 105 bits (116), Expect = 2e-18 Identities = 135/185 (73%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 18633 ATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCA 18692 || ||||| |||| || |||| | ||| || ||||| |||||||||||||| || || Sbjct 175012 ATTATGTTTTTTCG-TAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCT 175070 Query 18693 ACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGG 18752 || ||||||||||||| || || || | |||| | | || ||| || || | | |||| Sbjct 175071 ACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGG 175130 Query 18753 ATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCA 18812 ||||| | || |||||||| || | ||| || ||||| | || || || | ||| | | Sbjct 175131 ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATTA 175190 Query 18813 CATAA 18817 || || Sbjct 175191 CAGAA 175195 >seq1 Length=3292865 Score = 109 bits (120), Expect = 2e-19 Identities = 122/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 1433587 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 1433646 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 1433647 AGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA-- 1433704 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGT 17992 ||||||||||| ||||| ||||| | || ||||||||||| Sbjct 1433705 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGT 1433745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151177770542628