Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq52 271 2e-68 seq119 226 8e-55 seq1 143 8e-30 seq1508 104 7e-18 seq219 100 8e-17 >seq52 Length=1114353 Score = 271 bits (300), Expect = 2e-68 Identities = 479/695 (69%), Gaps = 6/695 (1%) Strand=Plus/Plus Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || |||||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 278836 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAA 278895 Query 21795 CCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTA 21854 || | || || | | || || || || | ||| | || || |||| | | Sbjct 278896 CCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 278955 Query 21855 CCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAA 21914 || ||||||||| || | ||||| ||||| || | ||||| | ||||||||| Sbjct 278956 CCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATGTGAAAT 279015 Query 21915 GGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGAT 21974 || |||||||| || |||| |||||||||||| | | ||| ||||||| | || || Sbjct 279016 GGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTACCAGAG 279075 Query 21975 ATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACA 22034 || | | |||||| |||||||||| || || || | || || | | ||| ||| Sbjct 279076 ATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAGAAAACA 279135 Query 22035 GCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGT 22094 ||||| || | || || ||||| || || |||||| ||||| || | ||| ||||| Sbjct 279136 GCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATACCTAGA 279195 Query 22095 CGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAAT 22154 || | |||||||||||||| || ||||| ||| | || |||| | |||||| | Sbjct 279196 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 279255 Query 22155 ACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAA 22214 || | |||| | ||||| || ||||| | ||| ||||||| | || |||||||| Sbjct 279256 ACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 279315 Query 22215 ATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATG 22274 ||||| || ||||| | || || || || | |||| | ||| || | || || Sbjct 279316 ATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAAATAATA 279375 Query 22275 TTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGT 22334 || || || || | || || || | || ||||| || || ||||| || || || || Sbjct 279376 TTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGA 279435 Query 22335 GGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATC 22391 || | ||| ||||| |||||||| | |||||| | | ||| ||| | | ||| Sbjct 279436 GGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCA--GTCAATAAGGTA-GAGATC 279492 Query 22392 ATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || | || || |||||||| | ||||||||||| Sbjct 279493 ATCAAAACACCAAACCATCCAATGTAAAGACGGTT 279527 >seq119 Length=805478 Score = 226 bits (250), Expect = 8e-55 Identities = 244/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533 ||||| || |||||||| || || || || |||||||| || | | ||||||| | | Sbjct 240752 AGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAGGA 240693 Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGG 21593 ||||||| || |||||||| || || || || | || | | | | | | ||||||| Sbjct 240692 CGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGG 240633 Query 21594 TTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAA 21653 || || ||||||||||| || |||||| | || ||| | || | |||| ||||||| Sbjct 240632 TTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACCAA 240573 Query 21654 ATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTA 21713 |||||||| |||||||| ||||| | ||||| || | | ||| || || || || ||| Sbjct 240572 ATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTA 240513 Query 21714 GCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCT 21773 |||||||||||||| | ||||||||||| || |||||||| || ||||| ||||| ||| Sbjct 240512 GCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCT 240453 Query 21774 TCCTCTTGACCAAACTTGTAACC 21796 |||||||||| || ||||||| Sbjct 240452 CCCTCTTGACCGAATCTGTAACC 240430 Score = 158 bits (174), Expect = 4e-34 Identities = 393/596 (66%), Gaps = 18/596 (3%) Strand=Plus/Minus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || || || ||| ||| ||||||||| || | || || ||||| || | ||| Sbjct 180033 GAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTACA 179974 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | ||||||||| | |||||||| || ||||||||||||||||| || | || || Sbjct 179973 CCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAAG 179914 Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGA 22019 ||||| || |||| || || | |||||| |||||||| | | || || | | || Sbjct 179913 TTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGGG 179854 Query 22020 TAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAG 22079 || | | ||| |||||||| | | || || ||||| || || |||||| || | Sbjct 179853 TAGATCAAGAAAACAGCAGTAGGTACTGCAACTGGAGCGGAATATGCAACAGCAATATAA 179794 Query 22080 GGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCA 22139 || | ||| |||| || | |||||||||||||| | ||||| ||| | || ||| Sbjct 179793 GGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCA 179734 Query 22140 ATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGT 22199 | | |||||| | || | ||| | ||||| || ||||| | ||| ||||||| Sbjct 179733 AGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAACC 179674 Query 22200 GTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACG 22259 | | |||||||| ||||| || ||||| || || || | | |||| | | Sbjct 179673 GATGTCGCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAATAATG 179614 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || | || || || || || | || | || || || | || ||||| || || ||| Sbjct 179613 GCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAATACCA 179554 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT---AAAACAAGTTGTAGCGGCA 22376 || || |||| ||| ||||| ||||| | | |||||| | | || Sbjct 179553 TCAATATCAA------------CAATGAAGGCTATAATGGATACAGAAGTTGCA--GTCA 179508 Query 22377 AGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 | ||| | || |||||| || || |||| ||| | ||||||||||| | ||| Sbjct 179507 ATAAGGTA-GGGATCATAGAAACACCAAACCGTCCAATGTAAAGACGGTTTTCAGT 179453 >seq1 Length=3292865 Score = 143 bits (158), Expect = 8e-30 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 1433588 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1433647 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || | || | | | | | | |||| Sbjct 1433648 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 1433707 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| |||||||||||||| ||| | || | |||| |||| Sbjct 1433708 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 1433767 Query 21651 CAAATACCTACAACAGG 21667 ||||||||||| ||||| Sbjct 1433768 CAAATACCTACTACAGG 1433784 >seq1508 Length=419047 Score = 104 bits (114), Expect = 7e-18 Identities = 219/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 22112 CTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGG 22171 ||| || ||||| ||| | || |||| | |||||| | || | |||| | || Sbjct 272415 CTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGG 272474 Query 22172 ACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAG 22231 ||| || ||||| | ||| ||||||| | || |||||||| ||||| || ||||| | Sbjct 272475 ACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAGATTGGATAAAAGTGCAA 272534 Query 22232 TCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291 || || || | | |||| | ||| || || || || || || || || | || Sbjct 272535 CCCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAG 272594 Query 22292 GGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGC 22351 || || | || ||||| || || ||||| || || || || || || ||| ||||| Sbjct 272595 AGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGC 272654 Query 22352 GATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 |||||||| | |||||| || ||| ||| | ||| |||| | || || ||||| Sbjct 272655 TATAATAAATACAGAAGTTGCAGT--CAATAAGGTAGGGA-TCATCAAAACACCAAACCA 272711 Query 22409 TCCTACATAAAGACGGTTATTAGT 22432 ||| | ||||||||||| | ||| Sbjct 272712 TCCAATGTAAAGACGGTTTTCAGT 272735 >seq219 Length=449544 Score = 100 bits (110), Expect = 8e-17 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | |||||| | || | |||| | ||||| || ||||| | ||| ||| Sbjct 176130 ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCA 176189 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGA 22253 |||| | || |||||||| ||||| || ||||| | || || || | | ||| Sbjct 176190 TCAACCGATGCCGCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGA 176249 Query 22254 ACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGG 22313 | | ||| || || || || || || || || | || || || | || ||||| || Sbjct 176250 ATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGA 176309 Query 22314 ATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTA 22370 || ||||| || || || || || || ||| ||||| |||||||| | |||||| | Sbjct 176310 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCA 176369 Query 22371 GCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTA 22430 | ||| ||| | ||| |||| | || || |||||||| | ||||||||||| | | Sbjct 176370 GT--CAATAAGGTAGGGA-TCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 176426 Query 22431 GT 22432 || Sbjct 176427 GT 176428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146072119950360