Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq752 113 5e-20 seq43 104 3e-17 seq477 100 3e-16 seq204 96.9 4e-15 seq40 86.0 7e-12 >seq752 Length=99127 Score = 113 bits (124), Expect = 5e-20 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACG 75186 |||||| ||||| || || ||||||| ||||||||||||||| || | ||||| | || | Sbjct 77307 GGGACTTTGATTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTAAAG 77249 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | ||| || | | |||| | || || ||||||| ||| |||| || | || || Sbjct 77248 GTCCGAGGGGCTGTTG-TGGAGAGACCCCAACACATGTTGATGAGGGTTGCTGTTGGGAT 77190 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGT 75305 |||| ||| || ||||| || | | | |||||| || |||||||| |||| || Sbjct 77189 CCACAAGGATGATATTGAGTCGGCTATCAAAACATACCACTTCATGTCCCAGAGGTG-GT 77131 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| || || | ||||| |||||||||||||| |||||||| || || Sbjct 77130 TCACCCATGCTTCCCCAACTCTCTTCAATGCTGGCACACCAAGGCCCCA 77082 >seq43 Length=1379160 Score = 104 bits (114), Expect = 3e-17 Identities = 229/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| || || || || || || ||| | ||| || || Sbjct 939227 CCAGGGACTGGAAAGACCCTGCTAGCTAAGGCTATTGCTGGAGAAGCTGGTGTTCCTTTT 939286 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | |||| || | ||||| || ||||||||||||||||| || | | Sbjct 939287 TTCTCCATT--TCTGGGTCAGAGTTTGTTGAAATGTTTGTTGGTGTGGGAGCATCTCGAG 939344 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || ||||| || | | || |||||| || || ||||| || ||||||| | Sbjct 939345 TGCGTGATCTTTTCAAGAAGGCAAAGGAAAATGCTCCTTGCATTGTGTTTGTTGATGAAA 939404 Query 175493 TTGATGCGGTGGGCAAG-CAA--CGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | ||||| ||||| | | ||| | | || | ||| | | || |||||| || || | Sbjct 939405 TAGATGCAGTGGGAAGGTCAAGGGGTACCGGTATTGG-AGG--AGGAAATGATGAAAGGG 939461 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 |||| ||| | ||||| || || || |||||||| || ||||| | | ||||| || Sbjct 939462 AACAGACACTAAATCAGCTTCTGACTGAGATGGACGGATTTGAGGGTAACACTGGTATAA 939521 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||| |||| || ||||| || | || || ||||| Sbjct 939522 TAGTTGTTGCTGCAACTAACCGAGCAGACATTCTTGA 939558 >seq477 Length=199787 Score = 100 bits (110), Expect = 3e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACG 75186 |||||| ||||| || |||||||||| ||||||||||||||| || | ||||| | | | Sbjct 9809 GGGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTGAAG 9867 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || || | | |||| | || ||| || |||| ||| |||| || | || || Sbjct 9868 GTCGGAGGGGCTGTTG-TGGAGAGACCCCAGCACTTGTTGATGAGGGTTGCTGTTGGGAT 9926 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || ||||| || | | | ||||| || |||||||| | ||| Sbjct 9927 CCACAAGGATGATATTGAGTCGGCTATCAAAACATATCACTTCATGTCCCAGAGATGGTT 9986 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || || | ||||| |||||||||||||| |||||||| || || Sbjct 9987 CACCCATGCTTCCCCAACTCTCTTCAATGCTGGCACACCAAGGCCCCA 10034 >seq204 Length=519899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| |||||||||| ||||| || || || | ||| | ||||| | || Sbjct 247130 TTTGTGGAGCTGTTTGTTGGAGTGGGAGCTTCTAGAGTGAGGGATTTGTTTGAGAAGGCT 247071 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | || | || || |||||||| ||||||||||||||||| || || | |||| | Sbjct 247070 AAGAGTAAGGCG-CCTTGCATTGTCTTTATTGATGAGATTGATGCTGTTGGTAGGCAAAG 247012 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || ||| | | | |||||| ||||| |||||||| |||||||| | | Sbjct 247011 AGGAGCAGGAATGGGAGGT--GGAAATGATGAGAGGGAACAAACTATTAATCAGTTGTTG 246954 Query 175573 ACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 246953 ACTGAGATGGATGGGTTT 246936 >seq40 Length=1826671 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||| | ||| |||| || || ||||| || || || |||||||| || Sbjct 1766625 TCCTTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGC 1766684 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| | || | ||| |||| ||||| || | ||||| || || ||||||||| Sbjct 1766685 TTCTGCTCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAAC 1766744 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || | || || || ||||| || || ||| || |||||| Sbjct 1766745 GAGTTGATATCGCGTGATGAAGGGCTTCACTGTGATTTTGCC 1766786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595985990874560