Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq52 333 3e-86 seq119 201 1e-46 seq1508 149 8e-31 seq219 147 3e-30 seq1 122 1e-22 >seq52 Length=1114353 Score = 333 bits (368), Expect = 3e-86 Identities = 489/692 (71%), Gaps = 0/692 (0%) Strand=Plus/Plus Query 8155 CCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAA 8214 ||||| || ||||||||||| || |||||||| || ||||| |||||||| || | ||| Sbjct 278836 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAA 278895 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA 8274 || | || ||| || | || || || || || || | | ||| || || || ||| Sbjct 278896 CCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 278955 Query 8275 CCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA 8334 || ||||||||||| || || || |||||||| | ||| |||| ||| ||| || || Sbjct 278956 CCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATGTGAAAT 279015 Query 8335 GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAA 8394 || |||||||| ||||| | ||| || ||||||| | ||| ||||| || ||||||| Sbjct 279016 GGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTACCAGAG 279075 Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACT 8454 || | ||||||||| |||||||| || || ||||| | ||| || | ||||| || Sbjct 279076 ATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAGAAAACA 279135 Query 8455 GCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAG 8514 || ||| | | |||||||| |||||| ||| ||||| || | |||||||| Sbjct 279136 GCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATACCTAGA 279195 Query 8515 CGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAG 8574 ||| | | ||||||| | |||||| ||| || | |||| | |||||| | Sbjct 279196 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 279255 Query 8575 ATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAA 8634 | || | | ||| ||||| || || || ||||||||||| | | || |||||||| Sbjct 279256 ACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAT 279315 Query 8635 ATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATG 8694 || ||||| ||||| || || ||||| | |||| |||| | ||||| | || || Sbjct 279316 ATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAAATAATA 279375 Query 8695 TTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGT 8754 || ||||| || | | || || | |||||||||||||||||| || ||||| || || Sbjct 279376 TTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGA 279435 Query 8755 GGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATT 8814 |||| |||||| || || | ||||| || || |||| || ||| || ||||| Sbjct 279436 GGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGAGATCATC 279495 Query 8815 AGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 | ||| |||||||| || | ||||| | ||| Sbjct 279496 AAAACACCAAACCATCCAATGTAAAGACGGTT 279527 >seq119 Length=805478 Score = 201 bits (222), Expect = 1e-46 Identities = 413/608 (68%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 ||||| || ||||| | | ||| || || | ||||| ||||||||||| || || || Sbjct 180054 GTTGTTTCCCTGATCAAACTAGAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAG 179995 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| | ||| ||| ||| || || | |||||||| ||||| ||||| Sbjct 179994 CCGCCGAATACACCAGGTACACCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCA 179935 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | || ||||| || ||| | || || ||||||||||| |||||||| Sbjct 179934 GCCTGGAATACAATCACAAAGTTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAA 179875 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 | | || ||| | | ||| || | ||||| || || || | | |||||||| Sbjct 179874 TAGGTTCCTTGATCGATTGGGTAGATCAAGAAAACAGCAGTAGGTACTGCAACTGGAGCG 179815 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| || | || | ||||||||| ||| | | ||||||| | Sbjct 179814 GAATATGCAACAGCAATATAAGGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGA 179755 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||| ||| || | |||| | |||||| | | || | ||| ||||| || Sbjct 179754 CCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCA 179695 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||||||||| | | | |||||||| || ||||| ||||| | || ||| Sbjct 179694 TTGTATAACCACTCATCAACCGATGTCGCTTCCCATATTGGATAAAAGTGCCACCCTATA 179635 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || |||| |||| | ||| | || || || || |||| || | | || || Sbjct 179634 GCTGCAGAAGTAGGAATAATGGCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCG 179575 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA 8778 | ||||||||||||||||| || ||||| ||| || || || || |||| |||| Sbjct 179574 GACACAGGTTCACGAATACCATCAATATCAACA-ATGAAG--GCTAT-AATG----GATA 179523 Query 8779 AAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 || |||| |||| || ||| ||| ||||| ||| ||||||| || | ||| Sbjct 179522 CAG-AAGT---TGCAGTCAATAAGGTAGGGATCATAGAAACACCAAACCGTCCAATGTAA 179467 Query 8839 AGTCTGTT 8846 || | ||| Sbjct 179466 AGACGGTT 179459 Score = 176 bits (194), Expect = 6e-39 Identities = 236/326 (72%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 7892 CTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTG 7951 ||| ||||| |||||||| || ||||| | |||||||||||||| |||| | | ||| | Sbjct 240754 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAG 240695 Query 7952 CTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATT 8011 | ||| | | ||| |||| ||| ||| | ||| | | |||||| || |||| Sbjct 240694 GACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 240635 Query 8012 GGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACC 8071 |||| || || || || || | || || | || || | |||||| | || ||| |||| Sbjct 240634 GGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACC 240575 Query 8072 AAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAAC 8130 ||| || ||| || || | | ||| | ||||||||| | | | | |||||| |||| Sbjct 240574 AAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAAC 240515 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 | ||||| |||||||| |||| |||||| || ||||||||||| || |||||||| || Sbjct 240514 TA-GCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTT 240456 Query 8191 TCTTCTTCTTGACCAAACTTATAACC 8216 ||| | |||||||| || | ||||| Sbjct 240455 TCTCCCTCTTGACCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 149 bits (164), Expect = 8e-31 Identities = 229/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 |||||| ||| || | |||| | |||||| | | || | | ||| ||||| || Sbjct 272421 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 272480 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||||||||| | | || |||||||| || ||||| ||||| || || || Sbjct 272481 ATTGTATAACCACTCATCAACCGATGCCGCTTCCCAGATTGGATAAAAGTGCAACCCTAT 272540 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||| |||| |||| | ||||| || || || || ||||| || | | || || Sbjct 272541 AGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCC 272600 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777 | |||||||||||||||||| || ||||| || || ||||||||||| || || | || Sbjct 272601 GGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAAT 272660 Query 8778 AAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATA 8837 ||| || || |||| || ||| ||| ||||| | ||| |||||||| || | || Sbjct 272661 AAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 272720 Query 8838 AAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| | ||| | || || || | ||| Sbjct 272721 AAGACGGTTTTCAGTGCTGGTTATCCA 272747 >seq219 Length=449544 Score = 147 bits (162), Expect = 3e-30 Identities = 200/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| || || || ||||||||||| | | || |||||||| || ||||| || Sbjct 176162 ATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCCCAGATTGGATAAAA 176221 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||| || || ||||| |||| |||| | ||||| || || || || ||||| || Sbjct 176222 GTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTATTTCCGTA 176281 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | | || || | |||||||||||||||||| || ||||| || || ||||||||||| Sbjct 176282 AAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAAT 176341 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| || || |||| || ||| ||| ||||| | ||| ||||| Sbjct 176342 GAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 176401 Query 8826 CCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| || | ||||| | ||| | || || || | ||| Sbjct 176402 CCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 176440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 8688 GATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATC 8747 ||| ||||| |||| || | | || || | |||||||||||||||||| || ||||| Sbjct 175011 GATTATGTTTTTTCG-TAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATC 175069 Query 8748 GACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGG 8807 || || ||||||||||| || || | ||||| || || |||| || ||| ||| Sbjct 175070 TACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGG 175129 Query 8808 AATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| |||||||| || | ||||| | ||| | || || || | ||| Sbjct 175130 GATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 175186 >seq1 Length=3292865 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 1433588 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1433647 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 1433648 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 1433707 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || | ||| || ||||| || | |||||| | || ||| ||| Sbjct 1433708 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 1433767 Query 8071 CAAACACATACAACTGGGAA 8090 |||| || ||| || || || Sbjct 1433768 CAAATACCTACTACAGGAAA 1433787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615259917210640