Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq52 271 2e-68 seq119 226 8e-55 seq1 143 8e-30 seq1508 104 7e-18 seq219 100 8e-17 >seq52 Length=1114353 Score = 271 bits (300), Expect = 2e-68 Identities = 479/695 (69%), Gaps = 6/695 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||||||||| | |||||||| || || | ||||| | | ||| ||| | | || Sbjct 279527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGAC--TGCA 279471 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||| ||||| ||| | || || || || || ||||| || || Sbjct 279470 ACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 279411 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 ||||| || | || || || | || || || || || || | || ||| | |||| Sbjct 279410 GAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCT 279351 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | || || || || | ||||| || ||||| |||||||| || | ||||||| Sbjct 279350 ACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAG 279291 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| || ||||| | |||| | || | |||||| | |||| || | Sbjct 279290 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 279231 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| ||||| || |||||||||||||| | || ||||| ||| | || ||||| | Sbjct 279230 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCT 279171 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || ||||| || || | || |||||||| ||| | | || || | || Sbjct 279170 GTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGT 279111 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || |||||||||| |||||| | | || || || | ||||||| ||| | Sbjct 279110 CAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATT 279051 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 | |||||||||||| |||| || |||||||| || ||||||||| | ||||| | || Sbjct 279050 ATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGT 278991 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 ||||| ||||| | || ||||||||| ||| | |||| || || | ||| Sbjct 278990 GTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATT 278931 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 | || || || || | | || || | ||||||| || |||||||||||||| Sbjct 278930 AGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAA 278871 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| ||||| || |||||||| || |||||||| Sbjct 278870 ACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 226 bits (250), Expect = 8e-55 Identities = 244/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||| ||| ||||| ||||| || |||||||| || |||||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 ||||| | ||||||||||||||||| || || || || ||| | | || ||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| ||||||||||||||| |||| | || | ||| || | |||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 || || ||||||||||| || ||||||||| | | | | | | || | || || || Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || |||||||| || |||||||| | ||||||| | | || |||||||| || || Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 42191 GCACACAACTTCCCGCTTGACCT 42213 || || |||||||| || ||||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCT 240752 Score = 158 bits (174), Expect = 4e-34 Identities = 393/596 (66%), Gaps = 18/596 (3%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | ||||||||||| | ||| |||| || || |||||| || | ||| ||| | Sbjct 179453 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTCTATGATCCC-TACCTTATTGAC 179511 Query 41315 GCTACAACTTGTTTT---ATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 | |||||| | | ||||| ||||| ||| |||| || ||||| Sbjct 179512 --TGCAACTTCTGTATCCATTATAGCCTTCATTG------------TTGATATTGATGGT 179557 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || ||||| || | || || || | || | || || || || || | ||| | Sbjct 179558 ATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATATTATTTCGGCTGCCATT 179617 Query 41432 GTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTT 41491 |||| | | || || || ||||| || ||||| |||||||| | | || Sbjct 179618 ATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATGGGAAGCGACATCGGTT 179677 Query 41492 GATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGC 41551 ||||| ||| | ||||| || ||||| | ||| | || | |||||| | |||| Sbjct 179678 GATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCTACACTTCTTACTTGGT 179737 Query 41552 GTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGG 41611 || | ||| ||||| | |||||||||||||| | || |||| ||| | || | Sbjct 179738 GTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTTTAGGTATGCGCCCTTAT 179797 Query 41612 ATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCG 41671 || |||||| || || ||||| || || | | |||||||| ||| | | || || Sbjct 179798 ATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTACTGCTGTTTTCTTGATCTACCCA 179857 Query 41672 TTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTAC 41731 | | || || | | |||||||| |||||| | || || |||| || ||||||| Sbjct 179858 ATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCTCCGATACTTTCAACTTT 179917 Query 41732 ATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTG 41791 || | || ||||||||||||||||| || |||||||| | ||||||||| | ||||| Sbjct 179918 GTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTTCACATGTTAGGTGTA 179977 Query 41792 GCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 | || ||||| || || | || ||||||||| ||| ||| || || || Sbjct 179978 CCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCCTTGTAACTTC 180033 >seq1 Length=3292865 Score = 143 bits (158), Expect = 8e-30 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42020 CCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAAT 42079 ||||| ||||||||||||||| |||| | || | ||| |||||||||||||| ||| Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 42080 GGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCT 42139 |||||||| || ||||||||| | | | | | | || | || || || || |||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 42140 GACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAAC 42199 || || |||||||||| |||||||| | || || |||||||| || || || || ||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 42200 TTCCCGCTTGACCTTGC 42216 ||||| || ||||| || Sbjct 1433604 TTCCCTCTAGACCTAGC 1433588 >seq1508 Length=419047 Score = 104 bits (114), Expect = 7e-18 Identities = 219/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | ||||||||||| | |||||||| || || | |||| ||| | ||| ||| Sbjct 272735 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTG-- 272679 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 || |||||| | |||||||| ||||| ||| || || || || || || ||||| Sbjct 272678 ACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGT 272619 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || ||||| || | || || || | || || || || || || || || ||| | Sbjct 272618 ATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATT 272559 Query 41432 GTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTT 41491 |||| | | || || || | ||||| || ||||| |||||||| || | || Sbjct 272558 ATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTT 272499 Query 41492 GATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGC 41551 ||||| ||| | ||||| || ||||| | |||| | || | |||||| | |||| Sbjct 272498 GATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 272439 Query 41552 GTCTTTGCTTACATGGGACGAGAG 41575 || | ||| ||||| || ||| Sbjct 272438 GTAGCTTGTTATATGGGTCGTGAG 272415 >seq219 Length=449544 Score = 100 bits (110), Expect = 8e-17 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | ||||||||||| | |||||||| || || | |||| ||| | ||| ||| Sbjct 176428 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTG-- 176372 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 || |||||| | |||||||| ||||| ||| || || || || || || ||||| Sbjct 176371 ACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGT 176312 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || ||||| || | || || || | || || || || || || || || ||| | Sbjct 176311 ATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATT 176252 Query 41432 GTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTT 41491 |||| | | || || || | ||||| || ||||| |||||||| || | || Sbjct 176251 ATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTT 176192 Query 41492 GATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGC 41551 ||||| ||| | ||||| || ||||| | |||| | || | |||||| | |||| Sbjct 176191 GATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 176132 Query 41552 GT 41553 || Sbjct 176131 GT 176130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146078514002448