Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq52 313 7e-81 seq119 212 2e-50 seq1508 158 3e-34 seq219 158 3e-34 seq1 143 8e-30 seq92 82.4 2e-11 >seq52 Length=1114353 Score = 313 bits (346), Expect = 7e-81 Identities = 511/731 (70%), Gaps = 4/731 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || | | | ||||||||||| |||| |||||| Sbjct 279563 TGGGGTCGCTTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTT 279504 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| | || || | | |||| || | ||| |||||| | || |||| Sbjct 279503 GGTGTTTTGATGAT-CTCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 279446 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||| | ||||| ||||| |||||||| |||||||||||||| || || ||||| || | Sbjct 279445 TTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTT 279386 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || || || || || | |||||| | | |||| || || || || | || | Sbjct 279385 ACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACT 279326 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| | || |||||||| | |||| || ||| | |||||||| || |||||| Sbjct 279325 TTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 279266 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 279265 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 279206 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || || || || | Sbjct 279205 TTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAG 279146 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 || ||||| || ||| | |||| ||| | || ||||| ||||| ||||| |||| Sbjct 279145 TGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGC 279086 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| | || || |||| |||||||| ||| | | ||||||||||| | ||||| | Sbjct 279085 CTCTATGAATCTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCC 279026 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | ||||| | || ||||| ||||| || | || | Sbjct 279025 TTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTG 278966 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || |||| ||| Sbjct 278965 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTG 278906 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 278905 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 278846 Query 42998 GTTACTTTGGA 43008 |||| |||||| Sbjct 278845 GTTATTTTGGA 278835 >seq119 Length=805478 Score = 212 bits (234), Expect = 2e-50 Identities = 243/324 (75%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 42946 GGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTT 43005 || |||| ||||||||||||| || |||||||| || || || || |||||||| ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 43006 GGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCT 43064 || || | |||||||||||||| | |||| || || ||| ||||| |||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTT 240548 Query 43065 TGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTT 43124 || |||||||| || || || |||||||| ||| || | || | |||||||| | || Sbjct 240549 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTT 240608 Query 43125 TAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCC 43184 || || |||||||| || || |||||||| | ||||||| ||| || ||| || Sbjct 240609 CAAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 240668 Query 43185 TACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAA 43244 ||||||||||||||| | || ||| | ||||||| | | || ||||| || || || Sbjct 240669 TACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAA 240728 Query 43245 TGCACATAACTTCCCGCTTGATCT 43268 ||| ||||||||||| || || || Sbjct 240729 TGCTCATAACTTCCCTCTAGACCT 240752 Score = 188 bits (208), Expect = 2e-43 Identities = 419/626 (67%), Gaps = 16/626 (3%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | ||||||||||| |||| ||||| Sbjct 179423 TGGGGTCGCTTCTGTAATTGGATAACCAACACTGAAAACCGTCTTTACATTGGACGGTTT 179482 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTT-ATTGTCGCTTTCA 42397 ||||| ||||| |||| || | | |||| || | ||| | ||| | || |||| Sbjct 179483 GGTGTTTCTATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATCCATTATAGCCTTCA 179540 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||| || | |||||||| |||||||||||||| || || ||||| || | Sbjct 179541 TTGTTG------------ATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTT 179588 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | | || || || || || | |||| | | |||| | || || || || | Sbjct 179589 ACTGAAATAATATTATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACT 179648 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| | || |||||||| | | |||| || ||| | |||||||| || |||||| Sbjct 179649 TTTATCCAATATGGGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 179708 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | | | || | |||||| | | ||| | | ||| |||| | || ||||||| Sbjct 179709 AACAAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAAC 179768 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| | || ||| | || | || |||||| || || || || || || | Sbjct 179769 TTAGTTTCCGTTTAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAG 179828 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | | ||||| || ||| | |||| ||| | | ||||| | | ||| ||||| |||| Sbjct 179829 TACCTACTGCTGTTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGC 179888 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || |||| ||| |||||||| || | || ||||||||||| || ||||| | Sbjct 179889 CTCTAGGAATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCC 179948 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| | || || ||| | ||||| | || ||||| || || || | || | Sbjct 179949 TTATGCACTCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTG 180008 Query 42878 CTATGCATGGTAGTCTTGTCACCTCT 42903 ||||||||||| ||||| || ||| Sbjct 180009 CTATGCATGGTTCCCTTGTAACTTCT 180034 >seq1508 Length=419047 Score = 158 bits (174), Expect = 3e-34 Identities = 230/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | ||||||||||| |||| |||||| Sbjct 272765 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 272706 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| || | ||| |||||| | || |||| Sbjct 272705 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 272648 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| || || ||||| || | Sbjct 272647 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTT 272588 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || || || || || || |||||| | | |||| | || || || | || | Sbjct 272587 ACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACT 272528 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| | ||||||||||| | |||| || ||| | |||||||| || |||||| Sbjct 272527 TTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 272468 Query 42578 AGCTCGTCGTGTTCCACTTC 42597 | || | || | |||||| Sbjct 272467 AACTAATTGTTCTACACTTC 272448 >seq219 Length=449544 Score = 158 bits (174), Expect = 3e-34 Identities = 230/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | ||||||||||| |||| |||||| Sbjct 176458 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 176399 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| || | ||| |||||| | || |||| Sbjct 176398 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 176341 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| || || ||||| || | Sbjct 176340 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTT 176281 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || || || || || || |||||| | | |||| | || || || | || | Sbjct 176280 ACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACT 176221 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| | ||||||||||| | |||| || ||| | |||||||| || |||||| Sbjct 176220 TTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 176161 Query 42578 AGCTCGTCGTGTTCCACTTC 42597 | || | || | |||||| Sbjct 176160 AACTAATTGTTCTACACTTC 176141 Score = 125 bits (138), Expect = 2e-24 Identities = 150/197 (76%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | ||||||||||| |||| |||||| Sbjct 175204 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 175145 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| || | ||| |||||| | || |||| Sbjct 175144 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 175087 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| || || ||||| || | Sbjct 175086 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTT 175027 Query 42458 ATGGCAACAACATCATC 42474 | | || ||||| ||| Sbjct 175026 A-CGAAAAAACATAATC 175011 >seq1 Length=3292865 Score = 143 bits (158), Expect = 8e-30 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 43075 CCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAAT 43134 || || || || |||||||| ||| || | || | ||||||||||| || ||||| ||| Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 43135 GGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCT 43194 ||||| || || |||||||| | ||||||| ||| || ||| || |||||||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 43195 GATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAAC 43254 ||||| | || ||||| |||||||| | || || ||||| || || ||||| |||||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 43255 TTCCCGCTTGATCTTGC 43271 ||||| || || || || Sbjct 1433604 TTCCCTCTAGACCTAGC 1433588 >seq92 Length=859423 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 42391 GCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCT 42450 || ||||||||||| ||||| ||||| |||||||| |||||||| ||||| || || ||| Sbjct 848452 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCCGGATCT 848511 Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 || | || || || || || || || |||||| Sbjct 848512 CTAGTTTACGGAAATAATATTATTTCGGGTGCC 848544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143399406177576