Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq52 289 8e-74 seq119 168 2e-37 seq1508 167 7e-37 seq219 167 7e-37 seq1 122 3e-23 >seq52 Length=1114353 Score = 289 bits (320), Expect = 8e-74 Identities = 500/721 (69%), Gaps = 4/721 (1%) Strand=Plus/Plus Query 26141 CCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAG 26200 ||||| || || || ||||| || |||||||| || ||||| ||||| || || | || Sbjct 278836 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAA 278895 Query 26201 CCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTT 26260 || | ||| || | | | ||| ||||| ||| | ||||| ||||| Sbjct 278896 CCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 278955 Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || ||||||||| || || | |||||||| || ||| | ||||| ||| || ||| Sbjct 278956 CCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATGTGAAAT 279015 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 |||||||| || || || | || || ||||||| | ||||||||| ||| |||||||| Sbjct 279016 GGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTACCAGAG 279075 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || | |||||||| |||||| ||| | ||||| |||| || || | ||||| || Sbjct 279076 ATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAGAAAACA 279135 Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGT 26500 || ||| | | | ||| || | |||||||||| ||||| || | ||| ||||| Sbjct 279136 GCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATACCTAGA 279195 Query 26501 CTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAG 26560 | | || |||||||||| | || ||| ||||| || | ||||||||| | Sbjct 279196 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 279255 Query 26561 ATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCA 26619 | ||| |||| ||| || || |||||||||| |||||| || | | |||| |||||||| Sbjct 279256 ACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC-GCTTCCCA 279314 Query 26620 GATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTAT 26679 || || ||||| || | || || || |||| | || | | || || | || || Sbjct 279315 TATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAAATAAT 279374 Query 26680 ATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGG 26739 ||| |||||||| | || || |||||||| || ||||| || ||||| |||||||| || Sbjct 279375 ATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGG 279434 Query 26740 CGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCA 26798 || | || |||||||| | ||||| ||| | ||| || | | |||| | |||| Sbjct 279435 AGGAGTAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGAGATCA 279493 Query 26799 TAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAA 26858 | | || || |||||||| | || |||||||| ||| | | || | ||| | ||| | Sbjct 279494 TCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAATGTTGGTTATCCAATTACAGA 279553 Query 26859 A 26859 | Sbjct 279554 A 279554 >seq119 Length=805478 Score = 168 bits (186), Expect = 2e-37 Identities = 227/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 25878 CTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAG 25937 ||| ||| || || ||||||||||||||||| || |||||||||| | | ||||||| Sbjct 240754 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAG 240695 Query 25938 CTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACT 25997 ||||| | | ||||||||| ||| |||| || | | ||| ||||| || | Sbjct 240694 GACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 240635 Query 25998 GGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCC 26057 |||| || || |||||||||| || || | || || | ||||| | || || | || Sbjct 240634 GGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACC 240575 Query 26058 ATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAAC 26117 | || || || || ||||||| ||| | ||||| || | |||||| ||| || |||| Sbjct 240574 AAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAAC 240515 Query 26118 TCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCT 26177 | ||||| || || || |||| ||||| || || || ||||| || |||||||| || | Sbjct 240514 TAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTT 240455 Query 26178 CTTCATCTTGCCCAAA 26193 || | ||||| || || Sbjct 240454 CTCCCTCTTGACCGAA 240439 >seq1508 Length=419047 Score = 167 bits (184), Expect = 7e-37 Identities = 235/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| |||| Sbjct 272434 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAC 272493 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| ||||||||||| || ||||| || | || || || ||| | Sbjct 272494 TCATCAACCGATGCC-GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 272552 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||| |||||||| | || || |||||||| || || Sbjct 272553 AGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTC 272612 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 272613 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAG 272671 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 272672 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 272731 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 272732 CAGTGCTGGTTATCCAATTACAGAA 272756 >seq219 Length=449544 Score = 167 bits (184), Expect = 7e-37 Identities = 235/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| |||| Sbjct 176127 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAC 176186 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| ||||||||||| || ||||| || | || || || ||| | Sbjct 176187 TCATCAACCGATGCC-GCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 176245 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||| |||||||| | || || |||||||| || || Sbjct 176246 AGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTC 176305 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 176306 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAG 176364 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 176365 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 176424 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 176425 CAGTGCTGGTTATCCAATTACAGAA 176449 >seq1 Length=3292865 Score = 122 bits (134), Expect = 3e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 1433588 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1433647 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 1433648 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 1433707 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| || | ||||| | || || | | Sbjct 1433708 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 1433767 Query 26057 CATATGCCAACAACCGG 26073 || || || || || || Sbjct 1433768 CAAATACCTACTACAGG 1433784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147574722191040