Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq52 374 1e-98 seq119 230 3e-55 seq1508 170 2e-37 seq219 170 2e-37 seq1 131 2e-25 seq92 82.4 9e-11 >seq52 Length=1114353 Score = 374 bits (414), Expect = 1e-98 Identities = 503/699 (72%), Gaps = 6/699 (1%) Strand=Plus/Minus Query 154992 TGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGC 155051 ||| ||||| | || | || ||||| |||||| | |||||| || | | | |||| Sbjct 279531 TGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGC 279472 Query 155052 TGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCG 155111 || | || ||| | |||||||||||| | ||||| ||||| |||||||||||||| Sbjct 279471 AACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 279412 Query 155112 TGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC 155171 |||||| || | || ||| || | || || || || || || | ||||| || | || Sbjct 279411 TGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCC 279352 Query 155172 TAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGA 155231 || ||| | || || || | ||||| ||||| || |||||||| ||| | ||||||| Sbjct 279351 TACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGA 279292 Query 155232 GTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 155291 |||||| |||||||||||||||| |||| | || | |||||| | | || | Sbjct 279291 GTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT--- 279235 Query 155292 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGAT 155348 ||| | | | |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 279234 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT 279175 Query 155349 CTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTT 155408 ||||||||| || || ||||| | | || ||||| ||| | | || || | Sbjct 279174 TGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAAT 279115 Query 155409 CGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 155468 ||||||||| || ||||||| |||||||| | |||||||||| ||| |||| ||| Sbjct 279114 CGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTAT 279055 Query 155469 GTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGC 155528 | | | ||||| || || |||| |||||||||||||| || |||||| | || |||| Sbjct 279054 GATTATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGT 278995 Query 155529 AGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACT 155588 ||||| |||||||| || || || ||||||||| ||||| ||||| || ||| | Sbjct 278994 TGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 278935 Query 155589 AATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGA 155648 || | ||||| || | | || ||| || | ||||||| ||||| ||||| || Sbjct 278934 GATTAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 278875 Query 155649 AGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGG 155687 |||||||||||| || || ||||||||||| || || || Sbjct 278874 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 230 bits (254), Expect = 3e-55 Identities = 410/597 (69%), Gaps = 20/597 (3%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || |||| |||||| |||||||||| | | | ||| Sbjct 179454 CTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTCTATGATCCCTACCTTATTGACTG 179513 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | | |||| | |||||||||| || | ||||||||||||| Sbjct 179514 CAACTTCTGTATCCATTATAGCCTTCATTGTTG------------ATATTGATGGTATTC 179561 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || | || ||| || | || | || || || || || | ||| || | | Sbjct 179562 GTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATATTATTTCGGCTGCCATTATTC 179621 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || || ||||| ||||| || |||||||| || | |||||| Sbjct 179622 CTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATGGGAAGCGACATCGGTTGATG 179681 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 ||||||| |||||||||||||||| ||| | || | |||||| | | || | Sbjct 179682 AGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCTACACTTCTTACTTGGTGT-- 179739 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||| | ||||||||||| || |||| | || ||||| |||| | Sbjct 179740 -AGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTTTAGGTATGCGCCCTTATA 179798 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTC-GCTGTATTCCTTGTTTATCCT 155406 | ||||||||| || || ||||| | | | | | | ||||| ||| | | || || Sbjct 179799 TTGCTGTTGCATATTCCGCTCCAGTTGCAG-TACCTACTGCTGTTTTCTTGATCTACCCA 179857 Query 155407 TTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTAT 155466 ||| |||||| | | ||||||| |||||||| || ||||| | |||||| |||| | Sbjct 179858 ATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCTCCGATACTTTCAACTTT 179917 Query 155467 ATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTA 155526 || | || ||||| || || ||||| |||||||||||| | || |||||| | || ||| Sbjct 179918 GTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATTTCACATGTTAGGTGTA 179977 Query 155527 GCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 | ||||| ||||| || || || || ||||||||| ||||| | || || ||| Sbjct 179978 CCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCCTTGTAACTTCT 180034 Score = 201 bits (222), Expect = 1e-46 Identities = 245/333 (74%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||||| ||||| ||||| | |||||||||||| || || ||||||||||| || || Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 ||||| | |||||||| ||||| ||||||||||| | | | ||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 ||||| |||||||| || | || ||| |||||| | ||| | || || | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 || | || |||||||| |||||||| |||||||| || |||| ||| || || Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATT 240666 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 ||| ||||| || || ||||||| || |||| |||| |||| ||||| || ||| Sbjct 240667 AATACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGT 240726 Query 155923 AACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 || ||||| ||||||||||| ||||| | |||| Sbjct 240727 AATGCTCATAACTTCCCTCTAGACCTAGATGCT 240759 >seq1508 Length=419047 Score = 170 bits (188), Expect = 2e-37 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | ||| Sbjct 272734 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTG 272675 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 272674 CAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 272615 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || | || ||| || | || || || || || || || ||||| || | | Sbjct 272614 GTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTC 272555 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || || | ||||| ||||| || |||||||| ||| | |||||| Sbjct 272554 CTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATG 272495 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||||||| |||||||||||||||| |||| | || | |||||| Sbjct 272494 AGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 272448 >seq219 Length=449544 Score = 170 bits (188), Expect = 2e-37 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | ||| Sbjct 176427 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTG 176368 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 176367 CAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 176308 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || | || ||| || | || || || || || || || ||||| || | | Sbjct 176307 GTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTC 176248 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || || | ||||| ||||| || |||||||| ||| | |||||| Sbjct 176247 CTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATG 176188 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||||||| |||||||||||||||| |||| | || | |||||| Sbjct 176187 AGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 176141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | ||| Sbjct 175173 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTG 175114 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 175113 CAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 175054 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATC 155154 ||||||| || | || ||| || | || | || ||||| ||| Sbjct 175053 GTGAACCTGTTTCCGGATCTCTACTTTA-CGAAAAAACATAATC 175011 >seq1 Length=3292865 Score = 131 bits (144), Expect = 2e-25 Identities = 152/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 155755 CCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAAC 155814 ||||| || | || ||| |||||| | ||| | || ||||| |||||| | || Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 155815 GGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGG 155871 |||||||| |||||||| |||||||| || |||| ||| || || ||| ||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGG 1433668 Query 155872 GCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCAC 155931 || || || ||||||| ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 1433667 GCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 1433608 Query 155932 AACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||| ||||| |||||| Sbjct 1433607 AACTTCCCTCTAGACCTAGCTGCT 1433584 >seq92 Length=859423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 |||||||||||||| ||||| ||||| ||||||||||||||||| || || | || ||| Sbjct 848452 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCCGGATCT 848511 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTA 155173 || | || || || || || || || ||||| || | |||| Sbjct 848512 CTAGTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTA 848554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584263070344720