Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq52 324 4e-84 seq119 208 2e-49 seq1508 176 1e-39 seq219 176 1e-39 seq1 122 2e-23 >seq52 Length=1114353 Score = 324 bits (358), Expect = 4e-84 Identities = 512/727 (70%), Gaps = 5/727 (1%) Strand=Plus/Plus Query 40791 AGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAAC 40850 ||||| ||||| ||||| || ||||||||||| |||||||| || | || ||||| || Sbjct 278831 AGTCT-CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAAT 278889 Query 40851 TTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACA 40910 | || || | || |||||| ||| ||||| |||| ||| | ||||| || Sbjct 278890 CTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACC 278949 Query 40911 AGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATA 40970 | | || ||||||||| ||| | | ||||| || || || | || || | ||| Sbjct 278950 AAGGAACCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATG 279009 Query 40971 TGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTT 41030 || ||||||||||| || ||||||| || || ||||| | || ||| |||||||| | Sbjct 279010 TGAAATGGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTA 279069 Query 41031 CCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAG 41090 ||| ||||| || ||||||||||||||| || || ||||||| ||| || | ||| Sbjct 279070 CCAGAGATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAG 279129 Query 41091 AATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATA 41150 || ||||| ||| ||| | |||||| | ||||| ||| ||||| || | |||| Sbjct 279130 AAAACAGCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATA 279189 Query 41151 CCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAG 41210 ||||| | | | ||||||||||| | ||| || ||||| || | ||| ||| Sbjct 279190 CCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAG 279249 Query 41211 TGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGC 41269 || | ||||| |||| ||| || || || ||||||| |||||| || | | |||| || Sbjct 279250 TGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCC-GC 279308 Query 41270 TTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGA 41329 |||||| ||||| || || || | || || || |||| | |||| | || || | Sbjct 279309 TTCCCATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAA 279368 Query 41330 TATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATC 41389 |||||||| || ||||| | || || |||||||| || ||||| || ||||| ||||| Sbjct 279369 AATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATC 279428 Query 41390 TACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTG 41448 ||| || || | || || ||||| || || || ||| | || ||||| | ||| | | Sbjct 279429 TACTGGAGGAGTAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAATAAGGTAG 279487 Query 41449 GAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGT 41508 ||||| | ||||||||||| || | ||| || ||||| || || | || | ||| | Sbjct 279488 AGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAATGTTGGTTATCCAAT 279547 Query 41509 TACAAAA 41515 |||| || Sbjct 279548 TACAGAA 279554 >seq119 Length=805478 Score = 208 bits (230), Expect = 2e-49 Identities = 420/618 (68%), Gaps = 20/618 (3%) Strand=Plus/Minus Query 40902 GAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACG 40961 ||||| |||||| || ||||||||| ||| | | || || || || || | || Sbjct 180033 GAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGGTACA 179974 Query 40962 CCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAG 41021 || | ||| || |||| |||||| || |||||||| || || ||||| |||| || ||| Sbjct 179973 CCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCACAAAG 179914 Query 41022 TTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGA 41081 ||||| || | |||||||| ||||||||||||||| | | || ||| ||| ||| Sbjct 179913 TTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAATAGGTTCCTTGATCGATTGGG 179854 Query 41082 TAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACA--AATATCC 41139 || | ||||| ||||| || | ||| | |||||| | ||||| ||| ||||| Sbjct 179853 TAGATCAAGAAAACAGCAGTAGGTACTGCAACTGGAGCGGAATATGCAACAGCAATAT-- 179796 Query 41140 ATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTC 41199 | || | |||||||| | | | ||||||||||| ||| || ||||| | Sbjct 179795 AAGGGCGCATACCTAAACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACAC 179736 Query 41200 CTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA 41259 | | ||| ||||| | ||||| ||| ||| || || || ||||||| |||||| || | Sbjct 179735 CAAGTAAGAAGTGTAGAACAATTTGTTCATAAGGACCACCATTGTATAACCACTCATCAA 179676 Query 41260 GTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACG 41318 | || | |||||||| ||||| || || || || || || ||| | |||| Sbjct 179675 CCGATGTC-GCTTCCCATATTGGATAAAAGTGCCACCCTATAGCTGCAGAAGTAGGAATA 179617 Query 41319 ACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATG 41378 | || | || |||||||| || | ||| | || || ||||| || || ||||| || Sbjct 179616 ATGGCAGCCGAAATAATATTATTTCAGTAAAGTAGAGATCCGGACACAGGTTCACGAATA 179557 Query 41379 CCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT-GAAACATGTGGTAGCAGT 41437 ||||| ||||| ||| || ||||| || || || ||| | || ||||| Sbjct 179556 CCATCAATATCAACA------------ATGAAGGCTATAATGGATACA-GAAGTTGCAGT 179510 Query 41438 TAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCT 41497 | ||| | || ||||| |||||||||| || | ||| || ||||| || ||| | Sbjct 179509 CAATAAGGTAGGGATCATAGAAACACCAAACCGTCCAATGTAAAGACGGTTTTCAGTGTT 179450 Query 41498 AGTGACCCAGTTACAAAA 41515 || | ||| ||||| || Sbjct 179449 GGTTATCCAATTACAGAA 179432 Score = 178 bits (196), Expect = 4e-40 Identities = 229/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 40534 CTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCT 40593 ||| ||||||||| ||||| ||||| ||||| || ||||| |||| |||| | || | Sbjct 240754 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAGGTTAG 240695 Query 40594 GTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACT 40653 | | ||||| | ||||||||||||| ||| || ||| | | || ||||| || | Sbjct 240694 GACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATT 240635 Query 40654 GGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCC 40713 |||| || || |||||||| | || ||| | |||||| ||||| | | |||| || Sbjct 240634 GGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGCAGTAAACC 240575 Query 40714 ATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATG 40773 | || || | || || ||||| | | |||||||||| | ||| |||||||| Sbjct 240574 AAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAAC 240515 Query 40774 AAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCT 40833 ||||||||| || || | || |||||| ||||| || ||||||||||| |||||||| | Sbjct 240514 TAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTT 240455 Query 40834 CGCCTTCCTGACCAAA 40849 | || || ||||| || Sbjct 240454 CTCCCTCTTGACCGAA 240439 >seq1508 Length=419047 Score = 176 bits (194), Expect = 1e-39 Identities = 237/325 (73%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| |||| ||| || || || ||||||| |||| Sbjct 272434 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAC 272493 Query 41253 TCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | ||||| ||||||||||||| || || || | || || || ||| | Sbjct 272494 TCATCAACCGATGCCG-CTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 272552 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || || || |||||||| || ||||| | || || |||||||| || || Sbjct 272553 AGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTC 272612 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| || || || || || ||||| || || || ||| | | Sbjct 272613 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAG 272671 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | ||||| | ||| | || ||||| | ||||||||||| || | ||| || ||||| | Sbjct 272672 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 272731 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| || | ||| ||||| || Sbjct 272732 CAGTGCTGGTTATCCAATTACAGAA 272756 >seq219 Length=449544 Score = 176 bits (194), Expect = 1e-39 Identities = 237/325 (73%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| |||| ||| || || || ||||||| |||| Sbjct 176127 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAC 176186 Query 41253 TCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | ||||| ||||||||||||| || || || | || || || ||| | Sbjct 176187 TCATCAACCGATGCCG-CTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 176245 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || || || |||||||| || ||||| | || || |||||||| || || Sbjct 176246 AGGAATAATGGCACCCGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTC 176305 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| || || || || || ||||| || || || ||| | | Sbjct 176306 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAG 176364 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | ||||| | ||| | || ||||| | ||||||||||| || | ||| || ||||| | Sbjct 176365 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 176424 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| || | ||| ||||| || Sbjct 176425 CAGTGCTGGTTATCCAATTACAGAA 176449 Score = 102 bits (112), Expect = 2e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 41344 CGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 41403 |||| | || || |||||||| || ||||| || ||||| |||||||| || || || | Sbjct 175024 CGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAG 175083 Query 41404 CGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACA 41462 | || ||||| || || || ||| | || ||||| | ||| | || ||||| | ||| Sbjct 175084 CAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 175142 Query 41463 CCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||||| || | ||| || ||||| || ||||| || | ||| ||||| || Sbjct 175143 CCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAATTACAGAA 175195 >seq1 Length=3292865 Score = 122 bits (134), Expect = 2e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 1433584 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1433643 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | ||||||||||||| ||| || ||| | | || ||||| Sbjct 1433644 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 1433703 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| | ||| |||||||||||| ||||| | | || Sbjct 1433704 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 1433763 Query 40709 AAGCCATATGCCAATAACCGGGAAA 40733 || ||| || || | || || ||| Sbjct 1433764 AAACCAAATACCTACTACAGGAAAA 1433788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143568848557908