Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq52 387 2e-102 seq119 273 2e-68 seq1508 161 1e-34 seq219 161 1e-34 seq1 140 4e-28 >seq52 Length=1114353 Score = 387 bits (428), Expect = 2e-102 Identities = 518/719 (72%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 67626 CCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAA 67685 || || || ||||||||||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 278836 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAA 278895 Query 67686 CCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAA 67745 || | || || || | | || ||||| || || | | |||||| || | ||| Sbjct 278896 CCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 278955 Query 67746 CCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAAT 67805 || |||||||||||||| || || |||||||||||||| |||| || | ||| || ||| Sbjct 278956 CCATGCATAGCACTAAATAGGGAGCCACCGAATACACCAACTACACCTAACATGTGAAAT 279015 Query 67806 GGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAA 67865 ||||||||||||||||||| ||| || ||||| | | ||| |||| ||| ||||||| Sbjct 279016 GGGTGCATAAGGATGTTGTTCTCAGCCTGGAATATAATCATAAAGTTGAAATTACCAGAG 279075 Query 67866 ATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACA 67925 || | |||||||| | ||||| || |||||||||| || |||| |||||| ||| Sbjct 279076 ATTCATAGAGGCATACCATCAGAAAAGTTTCCTTGACCGATTGGGTAGATCAAGAAAACA 279135 Query 67926 GCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGA 67985 || || | | |||||||| || ||||| ||| |||||||| |||||||| ||| Sbjct 279136 GCAGTAGCCACTGCAACTGGAGCGGAATATGCAACAGCAATCCAAGGGCGCATACCTAGA 279195 Query 67986 CGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGG 68042 ||| || ||||||||||| |||||| | | | ||| | || | | |||||| Sbjct 279196 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGT 279252 Query 68043 AAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCC 68102 | || | |||| |||| |||||||| || ||||||||||| | | ||| |||||| Sbjct 279253 AGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGCCGCTTCC 279312 Query 68103 CAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATG 68162 || || ||||| ||||| | || || || | ||| |||||| || ||||| |||| Sbjct 279313 CATATTGGATAAAAGTGCAACCCTATAGCTGTAGAAGTAGGAATAATGGCACCCAAAATA 279372 Query 68163 ATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACT 68222 || || || ||||| | || || || | ||||||||| | |||||||| ||||| ||| Sbjct 279373 ATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAATATCTACT 279432 Query 68223 GGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATC 68282 ||||| | |||||||| || || || || || | ||| | | ||| || ||| Sbjct 279433 GGAGGAGTAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGAGATC 279492 Query 68283 ATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 ||||| ||||| ||||| |||| || | || || |||| ||| | ||| ||||| Sbjct 279493 ATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAATGTTGGTTATCCAATTACA 279551 >seq119 Length=805478 Score = 273 bits (302), Expect = 2e-68 Identities = 374/518 (72%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| ||||| ||||| |||||||||||||| || || Sbjct 180054 GTTGTTTCCCTGATCAAACTAGAAGTTACAAGGGAACCATGCATAGCACTAAATAGGGAG 179995 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| | ||| || | ||| || |||| ||||||||||||||||||||| Sbjct 179994 CCGCCGAATACACCAGGTACACCTAACATGTGAAATGAGTGCATAAGGATGTTGTGCTCA 179935 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | || |||| |||||| | || || || |||||||| | ||||| Sbjct 179934 GCCTGGAATACAATCACAAAGTTGAAAGTATCGGAGATTCCTAGAGGCATACCATCAGAA 179875 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC-GAATG--CTGCAGACACTGGA 67946 | | |||||| ||| || |||| |||||| ||||| | | | ||||| |||||| Sbjct 179874 TAGGTTCCTTGATCGATTGGGTAGATCAAGAAAACAGCAGTAGGTACTGCA---ACTGGA 179818 Query 67947 GCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGA 68006 || || ||||| ||| || |||| |||||||| | |||| || ||||||||||| | Sbjct 179817 GCGGAATATGCAACAGCAATATAAGGGCGCATACCTAAACGGAAACTAAGTTCCCACTCA 179758 Query 68007 CGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063 |||| | | | ||| | || | | |||||| | || | ||| |||| Sbjct 179757 TGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTTGTTCATAAGGA 179701 Query 68064 CCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGA 68123 |||||||| || ||||||||||| | | || |||||||| || ||||| ||||| Sbjct 179700 CCACCATTGTATAACCACTCATCAACCGATGTCGCTTCCCATATTGGATAAAAGTGCCAC 179641 Query 68124 CCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGC 68183 || || || ||| |||||| || ||| | ||||| || || || | ||| | || Sbjct 179640 CCTATAGCTGCAGAAGTAGGAATAATGGCAGCCGAAATAATATTATTTCAGTAAAGTAGA 179581 Query 68184 GAACCTGCAACAGGTTCTCTGATACCATCGATATCAAC 68221 || || | |||||||| | |||||||| |||||||| Sbjct 179580 GATCCGGACACAGGTTCACGAATACCATCAATATCAAC 179543 Score = 205 bits (226), Expect = 1e-47 Identities = 246/333 (74%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||| | ||||| ||||||||||| ||||| ||||| || |||||||||| ||| |||| Sbjct 240759 AGCATCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTACATATCAAG 240700 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 | | ||||| ||| || ||||||||| ||| || || |||| ||||| Sbjct 240699 GTTAGGACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTATCAAC 240643 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | ||||| | ||||| | ||| | || Sbjct 240642 TACAGATTGGTTGAAATTGAAACCATTTAACTTGAAATCGATAGTACTAATACCTAAAGC 240583 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||| ||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 240582 AGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTT 240523 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| ||||| || || ||||||||||| || || || Sbjct 240522 GTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATT 240463 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACC 67687 ||||| ||| | ||||| ||||| ||||||| Sbjct 240462 ATAAGTTTCTCCCTCTTGACCGAATCTGTAACC 240430 >seq1508 Length=419047 Score = 161 bits (178), Expect = 1e-34 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 68036 GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGC 68095 |||||| | || | |||| |||| |||||||| || ||||||||||| | | ||| Sbjct 272448 GAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGC 272507 Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 ||||||||||| ||||| ||||| | || || || ||| |||||| || ||||| Sbjct 272508 CGCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACC 272567 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGAT 68215 ||||| || || || ||||| | || || || | ||||||||| | |||||||| || Sbjct 272568 CGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAAT 272627 Query 68216 ATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCA 68275 ||| |||||||| || |||||||| || || || || || | ||| | | ||| Sbjct 272628 ATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGT 272687 Query 68276 AGGAATCATCAACACACCGAACCAACCAA 68304 ||| |||||||| ||||| ||||| |||| Sbjct 272688 AGGGATCATCAAAACACCAAACCATCCAA 272716 >seq219 Length=449544 Score = 161 bits (178), Expect = 1e-34 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 68036 GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGC 68095 |||||| | || | |||| |||| |||||||| || ||||||||||| | | ||| Sbjct 176141 GAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACCGATGC 176200 Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 ||||||||||| ||||| ||||| | || || || ||| |||||| || ||||| Sbjct 176201 CGCTTCCCAGATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACC 176260 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGAT 68215 ||||| || || || ||||| | || || || | ||||||||| | |||||||| || Sbjct 176261 CGAAATAATATTATTTCCGTAAAGTAGAGATCCGGAAACAGGTTCACGAATACCATCAAT 176320 Query 68216 ATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCA 68275 ||| |||||||| || |||||||| || || || || || | ||| | | ||| Sbjct 176321 ATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAATAAGGT 176380 Query 68276 AGGAATCATCAACACACCGAACCAACCAA 68304 ||| |||||||| ||||| ||||| |||| Sbjct 176381 AGGGATCATCAAAACACCAAACCATCCAA 176409 >seq1 Length=3292865 Score = 140 bits (154), Expect = 4e-28 Identities = 156/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 1433584 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1433643 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474 || | ||||| ||| || ||||||||| ||| || || |||| ||||| Sbjct 1433644 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTATCAAC 1433700 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 1433701 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTACTAATACCTAAAGC 1433760 Query 67535 AGTGAACCAGATGCAGACCACAGGGAA 67561 ||| ||||| || | || ||||| || Sbjct 1433761 AGTAAACCAAATACCTACTACAGGAAA 1433787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566392569727920