Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq329 174 3e-38 seq1099 120 5e-22 seq37 114 2e-20 seq909 111 3e-19 seq865 104 4e-17 seq1663 93.3 8e-14 >seq329 Length=298387 Score = 174 bits (192), Expect = 3e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| |||||||||| ||||| |||| ||| || ||||||| Sbjct 180320 ATTTGCATCCCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTA 180261 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | |||||| ||| ||||| ||||| || ||||| || | ||| |||||| Sbjct 180260 TAGTCTGCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGA 180201 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| | || ||||||||||| || || ||||| || | |||| ||| || || ||| Sbjct 180200 TCAGGTGCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAA 180141 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || ||||| || || || || ||||| || ||||| Sbjct 180140 GTTTCAACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| || | ||| | || | || || ||| || || || Sbjct 180086 ATCCCACCCCTTAGACGAAGAACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCT 180027 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | |||||| || ||||| |||| ||||||||||| ||| Sbjct 180026 GCAAGGGTTCTTCCATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGA 179967 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || ||||| || | ||| ||| ||||| ||| ||| Sbjct 179966 GGAATCCCTTCTTTGTCTTGGATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCT 179907 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || ||||| ||||| || || || ||||| |||||||| Sbjct 179906 ACTTCTAGAGTGATTGTTTTCCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 >seq1099 Length=206994 Score = 120 bits (132), Expect = 5e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || | | || || || ||||| ||||| ||||| Sbjct 75056 ATCCTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTT 74997 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || ||||| || | ||| |||||| |||||| |||||| || |||||||| Sbjct 74996 ATCTTGGATCTTGGTCTTAACATTGTCAATAGTGTCGGAACTCTCAACCTCCAGAGTTAT 74937 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || |||||||| Sbjct 74936 AGTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 74901 >seq37 Length=1785839 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | |||| || || || || ||||||| | ||||| | Sbjct 885916 CGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTTCCA 885857 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||||||||| || || | | ||||| || || || || |||||||| Sbjct 885856 TCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTG 885797 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | || || || ||||| || || |||||||| ||||| Sbjct 885796 TCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATG 885737 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| ||||| || || || |||||||| Sbjct 885736 GTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq909 Length=350832 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| || | ||||| ||||| || | ||| | || || || || || |||| Sbjct 176275 ACCACCCCTAAGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGC 176334 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || |||| || || | ||||||||||| || || | | || || || || || Sbjct 176335 TAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 176394 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || |||| ||| | ||| || |||||||| || ||||| Sbjct 176395 GATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAAC 176454 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| ||||| || ||||| ||||| || || || |||||||| Sbjct 176455 CTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 176505 >seq865 Length=406355 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || ||||| || || |||||||| | || | || || || || ||||| Sbjct 6328 ATCCCTCCCCTCAAACGGAGCACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCA 6387 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || ||||||||||| || || ||||| || || || Sbjct 6388 GCCAAAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6447 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||||| |||| || |||||| ||||| ||| Sbjct 6448 GGGATTCCTTCCTTATCTTGGATTTTGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCC 6507 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || ||||| || || || ||||| || ||||| Sbjct 6508 ACCTCCAAGGTGATGGTCTTTCCTGTAAGAGTCTTAACAAAAATCTGCAT 6557 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||| | || | ||| || || || |||||| Sbjct 6556 ATACCACCACGAAGACGAAGGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 6615 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||||||||| || || ||||| || || || Sbjct 6616 GCTAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6675 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | || ||| || ||||| ||| Sbjct 6676 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCA 6735 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||| || || ||||| || ||||| Sbjct 6736 ACCTCGAGGGTGATGGTCTTCCCTGTTAGAGTCTTCACAAAGATCTGCAT 6785 >seq1663 Length=237253 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| || || || || || ||||| || ||||| || Sbjct 10356 TGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATC 10297 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| || || || || || || || ||||| ||||| ||||| || Sbjct 10296 TTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCG 10237 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || |||||||| Sbjct 10236 GTTAGGGTTTTCACGAAGATCTGCATTTT 10208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898774290591840