Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq329 111 2e-19 seq810 100 4e-16 >seq329 Length=298387 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||| | |||||||| || ||||| || ||||| ||| ||| Sbjct 180313 ATGCAAATCTTTGTGAAGACACTTACTGGAAAGACGATTACTTTGGAAGTGGAAAGTTCA 180372 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | ||| || || |||||||| || || || ||||| || Sbjct 180373 GATACAATTGATAATGTTAAGACTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 180432 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 180433 CAGAGGATTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGAACTTTGGCAGATTATAAT 180492 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 180493 ATTCAGAAGGAGTCTACTCTTCAT 180516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | ||||| || || ||||| | || || ||| |||| Sbjct 180085 ATGCAGATCTTTGTTAAGACCCTTACTGGTAAGACCATTACTCTTGAGGTTGAAACTTCT 180144 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || | || || || ||||||||||| || | || || ||| Sbjct 180145 GACACGATTGAAAATGTTAAGACCAAGATTCACGATAAAGAAGGTATTGCACCTGATCAA 180204 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || || ||| | || ||| |||||| | |||| |||||| Sbjct 180205 CAAAGACTCATCTTTGCTGGGAAACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAAT 180264 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| | || || ||||| || | | || ||||| || Sbjct 180265 AT-TCAAAAGGAGTCTACTCTGCATTTGGTACTTCGTTTGAGAGGTGG 180311 >seq810 Length=562993 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | ||||||||||| || || | ||||||||| ||| Sbjct 115989 AATGCAGATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCCTCGAAGTCGAAAGTTC 115930 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || |||||| |||||||| || || || || ||||| || Sbjct 115929 CGACACCATTGACAACGTCAAGGCTAAAATCCAAGATAAGGAGGGTATTCCCCCAGACCA 115870 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| |||| | ||||| || |||||||| ||| | ||||| | | ||||| || Sbjct 115869 GCAAAGGCTGATCTTCGCCGGAAAACAGCTCGAGGATGGCCGAACTCTTGCCGATTACAA 115810 Query 156002 TAT 156004 || Sbjct 115809 CAT 115807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731156027919200