Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq329 149 1e-30 seq37 122 2e-22 seq1099 105 1e-17 seq909 102 2e-16 seq865 93.3 8e-14 seq20 93.3 8e-14 seq1663 91.5 3e-13 seq810 91.5 3e-13 >seq329 Length=298387 Score = 149 bits (164), Expect = 1e-30 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | ||| | ||| ||||| | ||||| ||| ||| || |||||||| || Sbjct 180314 ATCCCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGA-ATATTATAGTC 180256 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | |||| |||| || || ||||| ||||||||||| | ||| ||||||||||| Sbjct 180255 TGCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGG 180196 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||||||||| || || || | || ||||| || | || || | ||| Sbjct 180195 TGCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTC 180136 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| |||||||| | || |||| ||| |||||||| Sbjct 180135 AACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| || ||||| | |||||||| | ||| | || ||| || || || ||||| Sbjct 180086 ATCCCACCCCTTAGACGAAGAACTAAATGGAGAGTTGATTCCTTTTGA-ATGTTGTAATC 180028 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | |||| | |||| || | |||||||||||||||||||| ||||||||||| || Sbjct 180027 TGCAAGGGTTCTTCCATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGG 179968 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| ||||| || || | || ||||| || | ||| || || Sbjct 179967 AGGAATCCCTTCTTTGTCTTGGATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTC 179908 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||||| || ||||| || || | ||| || | ||| || ||||| Sbjct 179907 TACTTCTAGAGTGATTGTTTTCCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || | ||| | ||||| ||| || ||||||||||| | || |||| Sbjct 180530 AGACGAAGAACAAGATGAAGAGTAGACTCCTTCTGAATATTATAATCTGCCAAAGTTCTC 180471 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| |||||||| || ||||||||||| | ||||| ||||| ||||| || || ||| Sbjct 180470 CCATCCTCCAATTGCTTCCCAGCAAAGATAATCCTCTGCTGATCTGGTGGGATACCCTCT 180411 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || ||| | || |||||| || | |||||| ||| ||||| | |||| Sbjct 180410 TTATCCTGAATCTTAGTCTTAACATTATCAATTGTATCTGAACTTTCCACTTCCAAAGTA 180351 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| | ||| || | ||| || ||||| Sbjct 180350 ATCGTCTTTCCAGTAAGTGTCTTCACAAAGATTTGCAT 180313 >seq37 Length=1785839 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || | ||||| || || ||| || || || | Sbjct 885928 CCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCA 885869 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | |||| ||||| ||||| || || ||||| | | ||||| || ||||| Sbjct 885868 AGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGG 885809 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| || || ||| || || || | || || ||||||||| Sbjct 885808 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACT 885749 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| || |||| ||||| | || ||||||||||| Sbjct 885748 TCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq1099 Length=206994 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||| || |||||||||||||| ||||| ||||| || || ||||| || | Sbjct 75513 CATCCTCCAATTGCTTTCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATTCCCTCCT 75454 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || |||||| || ||||| || | ||||| || || || ||||||| Sbjct 75453 TATCCTGAATTTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAGAGTAA 75394 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || ||||| || || || | || ||||||||| Sbjct 75393 TAGTCTTCCCAGTCAAGGTCTTGACGAAAATCTGCATT 75356 >seq909 Length=350832 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| |||||||| | || | || | || | || || ||| || ||||| | Sbjct 176275 ACCACCCCTAAGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGGC 176334 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| | || || | ||||| || || ||||| | | || || || ||||| Sbjct 176335 TAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 176394 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || ||| ||||| || | ||| || ||||| || Sbjct 176395 GATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCAAC 176454 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| ||||||| ||||| | || ||||||||||| Sbjct 176455 CTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 176505 >seq865 Length=406355 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | || | || | ||| || || || |||||| Sbjct 5644 ATACCACCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCA 5703 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||| ||||||||||| || ||||| || || || Sbjct 5704 GCCAAGGTGCGACCATCCTCAAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGG 5763 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | || || || Sbjct 5764 GGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCAATCGTGTCCGAGCTCTCA 5823 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| |||||||| || || || | ||| ||||||||| Sbjct 5824 ACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAAATCTGCATT 5874 >seq20 Length=1286389 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| |||||||| | || | || | ||| | || || ||| || || || | Sbjct 250564 ACCACCCCTAAGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGC 250505 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| | || || | || || || || ||||| | | ||| || || || || Sbjct 250504 TAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 250445 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || || ||||| || | ||| || ||||| || Sbjct 250444 GATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAAC 250385 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||||| || |||||||| || |||| ||||| | || ||||||||||| || Sbjct 250384 CTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTTTT 250331 >seq1663 Length=237253 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||| || ||| || || || | | ||| ||| | || || | ||||| || Sbjct 10407 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCG 10348 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 || ||||| | | ||| || || || || || ||||| || ||||| || || ||| Sbjct 10347 GCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTC 10288 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | || || |||||||| ||||| || |||||||| || |||| ||| Sbjct 10287 ACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 10228 Query 192520 TTAATAAATATCTGCATTTT 192539 || | || ||||||||||| Sbjct 10227 TTCACGAAGATCTGCATTTT 10208 >seq810 Length=562993 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || || |||| || | ||| || ||||||||||| |||||| Sbjct 114895 ATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCTC 114954 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || || || || || || || || ||| || |||||| || | | Sbjct 114955 TGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATCGTA 115014 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || ||||| || ||||| || || || || || || | ||| |||||| Sbjct 115015 TCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAAATCTGC 115074 Query 192535 ATT 192537 ||| Sbjct 115075 ATT 115077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983492830523700