Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq329 136 7e-27 seq37 109 1e-18 seq909 104 4e-17 seq1663 98.7 2e-15 seq20 95.1 2e-14 >seq329 Length=298387 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||| ||||| | ||||| ||| || ||||||||| ||| Sbjct 180314 ATCCCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCT 180255 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || || ||||| |||||||| || | ||| ||||| |||||| Sbjct 180254 GCAAGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGT 180195 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | || ||||||||||| || || || | || ||||| || || || || | ||| Sbjct 180194 GCAATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCA 180135 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| |||||||| | || |||| || |||||||| Sbjct 180134 ACCTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||||| ||| || |||||||||||||| |||| || | || |||||||| Sbjct 180516 ATGAAGAGTAGACTCCTTCTGAATATTATAATCTGCCAAAGTTCTCCCATCCTCCAATTG 180457 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || |||||||| || | ||||| || || ||||| || || |||||||| || || || Sbjct 180456 CTTCCCAGCAAAGATAATCCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTGAATCTT 180397 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | | || |||||| || |||||||| ||| ||||| | |||||| || || ||||| Sbjct 180396 AGTCTTAACATTATCAATTGTATCTGAACTTTCCACTTCCAAAGTAATCGTCTTTCCAGT 180337 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 | ||| || | || || ||||| Sbjct 180336 AAGTGTCTTCACAAAGATTTGCAT 180313 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | |||||||| | ||| | || || ||| || |||||| Sbjct 180086 ATCCCACCCCTTAGACGAAGAACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCT 180027 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | ||||||||||||||| |||| |||||||| || || Sbjct 180026 GCAAGGGTTCTTCCATCCTCGAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGA 179967 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || | || ||||| || ||||| || ||| Sbjct 179966 GGAATCCCTTCTTTGTCTTGGATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCT 179907 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| || ||||| || || | ||| || | || || ||||| Sbjct 179906 ACTTCTAGAGTGATTGTTTTCCCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 >seq37 Length=1785839 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||| || || || || | | |||||||| ||||| || |||||||| Sbjct 885856 TCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTG 885797 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || ||| || || || || || || |||||||||||||| || ||| Sbjct 885796 TCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATG 885737 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || |||| ||||| | ||| ||||||||||| Sbjct 885736 GTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCATTTT 885699 >seq909 Length=350832 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | || | ||| |||| || | ||||| || || || || | | Sbjct 176321 ATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGT 176380 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| || ||||| || || ||| ||||| || ||| Sbjct 176381 TGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTA 176440 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| || ||||| || |||||||| ||||||| ||||| | ||| |||||| Sbjct 176441 TCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGC 176500 Query 172068 ATTTT 172072 ||||| Sbjct 176501 ATTTT 176505 >seq1663 Length=237253 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| |||| || | ||||| || || || || | | ||| ||||| || || || ||| Sbjct 10371 CGTCCGTCTTCAAGCTGTTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCT 10312 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || ||||| || || ||| ||||| || || || || |||||||| ||||| Sbjct 10311 TCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGG 10252 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||||||| || |||| ||||| | ||| ||||||||||| Sbjct 10251 GTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 10208 >seq20 Length=1286389 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || |||||| ||||| || | || | || | ||| | || || || || Sbjct 250572 TTCTTAGCACCACCCCTAAGACGAAGCACCAGGTGAAGAGTTGATTCCTTCTGGATGTTG 250513 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || | || | ||| |||| || | || || || || || || | | ||| ||| Sbjct 250512 TAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG 250453 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || || ||||| |||||||| || || || ||||| || ||||| || Sbjct 250452 TCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATGGTATCGGAG 250393 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| || ||||| || |||||||| || |||| ||||| | ||| ||||||||||| Sbjct 250392 GATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 250333 Query 172074 TT 172075 || Sbjct 250332 TT 250331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904250528079600