Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq204 122 3e-22 seq1296 102 2e-16 seq114 96.9 1e-14 seq43 96.9 1e-14 seq5 96.9 1e-14 >seq204 Length=519899 Score = 122 bits (134), Expect = 3e-22 Identities = 281/419 (67%), Gaps = 22/419 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||||| ||||||||||| ||||||||| ||| Sbjct 246936 AAACCCATCCATCTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTTCCACC 246995 Query 288999 TCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 || | | || |||||| ||| |||||||||||||||| || ||||| | Sbjct 246996 TC----------CCATTCCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAA 247045 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | | | || || | || | || | |||| || || || || | || |||| Sbjct 247046 AGACAATGCAAGGCGCCTTACTCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTC 247105 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAAT-GAATGTTACATTT 289173 | | |||||| ||| || ||||| |||||||| | || ||| ||||| | Sbjct 247106 CCACTCCAACAAACAGCTCCACAAACTCAGAAGCTGC-ACACGAAAAGAATGGTGTTCCG 247164 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || || || || |||||||||| || ||||| || ||||| ||||| ||| | | Sbjct 247165 GCCTCCCCAGCCACCGCCCTCGCCAACAGCGTCTTCCCAGTTCCGGGTGGCCCCACAAGG 247224 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 ||| ||||| || | ||| ||||| |||| | || || |||||| | || ||| Sbjct 247225 AGACACCCCTTGGGAATTTTAGCCCCCAATGCAG---TGTACTTATCAGGGTTTTTCAAA 247281 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 || || |||| ||||| | ||| || || | |||| || || ||||||||||| Sbjct 247282 AAGTCAACAACTTCCTGCAACTCAAGCTTAGCTTGATCAGCACCGGCAACATCAGCAAA 247340 >seq1296 Length=127414 Score = 102 bits (112), Expect = 2e-16 Identities = 219/319 (69%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 |||| |||||||| || ||||||||||| | || || | | |||||| || || | Sbjct 86417 CCAATTGCATCAATCTCATCAATGAAAATAATACTAGGTGCACATTGTCTTGC--TTCCT 86474 Query 289089 -AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||||| | |||||| | |||| |||| ||||||| |||| || | ||| || ||| Sbjct 86475 GGAATAAGTTTCTTACTCTAGATGGCCCAACACCAACAAACATCTCCATAAAATCTGAAC 86534 Query 289148 CGGATACTTGAATG-AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | ||| | || | |||| | ||| || || |||| | || || || ||| Sbjct 86535 CAGATA-TAGAAAGAAAGGGTACACCAGATTCCCCAGCAGTTGCCTTAGCTAGTAGCGTC 86593 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || ||||| || || || || | || ||| | || || || | |||||| |||| | Sbjct 86594 TTTCCTGTCCCTGGCGGCCCAACCAACAGAGCACCTTTGGGAATTTTTGCACCCA--AAT 86651 Query 289266 CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 ||| ||| |||| || |||| | || | |||| ||| | ||| | ||||| | Sbjct 86652 CTTCATACTTCTTTGGATTCTTAAGGAAGTGCACAAACTCCATGATTTCTTGCTTTGCTT 86711 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || || ||||| Sbjct 86712 CATCACAGCCAGCAACATC 86730 >seq114 Length=827247 Score = 96.9 bits (106), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||||| ||||||||||||||| | | |||||| || || |||| Sbjct 171572 ACCAACAGCATCAAGTTCGTCAATGAAAATAATTGATGGAGAACATTTCCTTGCAACATT 171513 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | |||||| | ||| | ||||| |||||| | | ||| ||||||||| || Sbjct 171512 AAAAAGTTCTCTAATACGTGCAGCTCCCCTCCCAACAAATAATTCAACAAATTCACTGGC 171453 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||||| | ||| | ||| ||||| ||||| || || | || || | || || Sbjct 171452 AGATACAGAGAAGAAGGGAACACCAGCTTCTCCTGCCACAGCACGGGCTAGCAAGGTTTT 171393 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA 289249 || |||||||| || || | || ||||| || |||||| Sbjct 171392 TCCAGTTCCAGGAGGACCTACCAACAGAACACCTCTTGGTA 171352 >seq43 Length=1379160 Score = 96.9 bits (106), Expect = 1e-14 Identities = 279/421 (66%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || |||||| ||||| || | || ||||| ||||| |||||||||||||||||| Sbjct 939505 CTCAAATCCGTCCATCTCAGTCAGAAGCTGATTTAGTGTCTGTTCCCTTTCATCATTT-- 939448 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| | | ||| | | | |||| | || || ||||| ||||| |||| || Sbjct 939447 -CCTCCTCCAATACCGGTA---CCCCTTGACCTTCCCACTGCATCTATTTCATCAACAAA 939392 Query 289056 AATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||||| | || ||| ||| | || | || || |||||| Sbjct 939391 CACAATGCAAGGAGCATTTTCCTTTGCCTTCTTGAAAAGA--TCACGCACTCGAGATGCT 939334 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| ||||||| ||||| || || | || | | || | || | ||| Sbjct 939333 CCCACACCAACAAACATTTCAACAAACTCTGACCCAGA-AATGGAGAAAAAAGGAACACC 939275 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | ||| | || || || ||||| || || || || || || | | Sbjct 939274 AGCTTCTCCAGCAATAGCCTTAGCTAGCAGGGTCTTTCCAGTCCCTGGAGGGCCAACAAG 939215 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| ||||| || | || ||| ||| || | ||||||| | || | || Sbjct 939214 AAGAACACCCTTAGGGATGCGAGCTCCAACAGCAGTAAACCTCTCAGGTTTTTTCAGGAA 939155 Query 289293 TTCTACAATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 ||| || | ||| | ||| || | ||||| |||||| || || |||||| |||||| Sbjct 939154 TTCCACTACCTCCATGAAG-TCCTGCTTTGCTTCATCAACACCAGCAACATCATCAAAAG 939096 Query 289352 T 289352 | Sbjct 939095 T 939095 >seq5 Length=2276069 Score = 96.9 bits (106), Expect = 1e-14 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | ||| ||||| || ||||| |||||| | |||| | || Sbjct 141553 GGCAATGAGCCCACAGCGTTCACATACATGAACCCTGTATGCATCACTTTGGTCAAAAAG 141612 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || ||| ||| ||||| |||| |||||| ||||| | |||||| || || Sbjct 141613 CCTTTCTTTAAGAAAGTGAGCAGCACCATGTGCAATCATGCAATCTCTCTCCATCTCTCC 141672 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || |||||||||||||| |||| | ||||| |||||||| | || ||| | | Sbjct 141673 AAATCGAAGACCACCATCACGAGAACGTCCCTCCGCAGGCTGCCTCGTCAGAATTTGTAC 141732 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||| || ||| ||| ||| |||| ||||||||||| || | |||||| Sbjct 141733 AGGCCCTCGTCCCCGGGAATGGATCTTGTCATCCACCATATGCTTAAGTCTTTGGTAG 141790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470341761578294