Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq37 114 1e-20 seq1435 96.9 3e-15 seq329 89.7 4e-13 seq909 86.0 5e-12 >seq37 Length=1785839 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || |||||||| ||||||| |||||||| ||| | ||| || | Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || || | || || |||||| |||| |||| |||||| | || || ||| Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || |||||||| | ||| ||||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTG 885911 >seq1435 Length=543809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || ||||| |||| || |||||||| ||| | ||| ||| | Sbjct 91726 AATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTC 91785 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | | || ||| ||||| |||||||| || | || ||| || Sbjct 91786 CGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCA 91845 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | || || || || | ||||||| |||||| | || |||||||| Sbjct 91846 GCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAA 91905 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || ||||| || | ||| ||||| Sbjct 91906 CATTCAGAAGGAATCGACCCTTCACTTGGTG 91936 >seq329 Length=298387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || || ||||| || || | ||| ||| | Sbjct 179857 ATGCAAATCTTTGTGAAGACACTTACAGGGAAAACAATCACTCTAGAAGTAGAGAGTTCT 179916 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||| ||||||||||| | || |||||| Sbjct 179917 GATACAATTGACAATGTTAAGACCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCAA 179976 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| |||||||| || ||||||| ||||| | || ||||||||| Sbjct 179977 CAGAGGCTAATCTTTGCTGGTAAACAACTCGAGGATGGAAGAACCCTTGCAGATTACAAC 180036 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| ||||| || Sbjct 180037 ATTCAAAAGGAATCAAC 180053 >seq909 Length=350832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 110262 AGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA 110321 ||||| |||||||| || || || ||||| |||| || |||||||| ||| | || Sbjct 176513 AGAGAGAAAAAATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAGG 176454 Query 110322 CGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGC 110381 || | |||||| ||| | | || ||| ||||| ||||| |||||| | | Sbjct 176453 TTGAATCCTCCGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCC 176394 Query 110382 CCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGG 110441 | || || ||| | || || | || || |||||||| || || | | |||| | | Sbjct 176393 CACCAGACCAGCAACGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGAACCCTAG 176334 Query 110442 CGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 | ||||||||||| ||||| ||||| || | ||| |||| Sbjct 176333 CCGATTACAACATCCAAAAGGAATCAACACTTCACCTGGT 176294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412447824199166