Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq66 150 3e-30 seq40 138 2e-26 >seq66 Length=1001823 Score = 150 bits (166), Expect = 3e-30 Identities = 189/256 (74%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || |||||||| |||||||| | |||||| || || || || |||||| Sbjct 952757 GCCTCAGCAACCTGGACCTCTTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCG 952698 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||| || |||||||||| |||||||| || ||||| Sbjct 952697 TCGGAGGCGGCGAAGAAGGCGAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGC 952638 Query 796270 GAGA---CCCAGTGGACCGT-GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||| || || || ||| |||||| || || || || ||||| ||||| Sbjct 952637 GCGGTTTCCCAATG-ACGGTTGTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGA 952579 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 ||| || ||||| |||||||||||||| || || |||| ||| ||||||| | || Sbjct 952578 GGCTTCAGCCTTCTTGTACATCTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAA 952519 Query 796386 GCGATTGGGGTTCTCG 796401 | || ||||| ||| Sbjct 952518 TCTATCTGGGTTTTCG 952503 Score = 136 bits (150), Expect = 6e-26 Identities = 201/285 (71%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | |||||||| |||||||| || |||| |||||||| || ||||| ||| Sbjct 953042 CCGGGCATTAACCCGCGCTTTTTGAGCCAGAATATGGAGCAGAAACTTCCGGAGAAGAAG 952983 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| || || | | |||| ||||||||| || ||| || Sbjct 952982 ATCCCTTCAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCA--- 952926 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 ||||| | |||||||| || || ||| |||| |||| | || ||||| || Sbjct 952925 ---ATCCATCGGAGGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCT 952869 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || ||||||||| || | | ||| |||| |||||| || | |||||| ||||| Sbjct 952868 CGGAAGAGGTGGGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTAC 952809 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||||||||| || || ||||| || || ||| Sbjct 952808 ATTTCGGAGTGGATGTTTTCGATTGCTATTTGGAACCCGTAGAAG 952764 >seq40 Length=1826671 Score = 138 bits (152), Expect = 2e-26 Identities = 184/255 (72%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||| ||||| || |||||||| | ||||| || || || ||||||||| Sbjct 1766443 GCCTCTGCTACCTGGACGTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATGCCG 1766384 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||||| ||| |||| ||||| |||||||| || |||| Sbjct 1766383 TCAGAGGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAGTGTTGCTCGTCGGCGGTGAGG 1766324 Query 796270 GAG---ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||||| |||| | ||| ||||| || || |||||||| |||||| Sbjct 1766323 ATGTTTTCCCAGTGGCGGTTGTCCTCTGAGAGATCGACTTCTTCCGCGGTCCAGAAGGAG 1766264 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 || || || || |||||||| ||||| || || | || ||| ||||||| | || Sbjct 1766263 GCTTCAGCTTTCTTGTACATTTCCCAGATTTGTGGATATTTGATTGGGAACATACAGAAT 1766204 Query 796387 CGATTGGGGTTCTCG 796401 | || ||||| ||| Sbjct 1766203 CTATCTGGGTTTTCG 1766189 Score = 123 bits (136), Expect = 4e-22 Identities = 198/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | |||||||| || ||||| || |||| ||||| || || ||||| || Sbjct 1766728 CCGGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAA 1766669 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || || || || | | || | ||||| || | || || || Sbjct 1766668 ATCCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGATTCTGCTCCGTC---- 1766613 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||| ||||| || ||| |||| |||| | || ||||| ||| Sbjct 1766612 --GATCCATCGGAGGGCCCAATCTGCTTTCTTCTTCACACAGGGGATGGTCTCGATTGCG 1766555 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || ||||||||| || | | | ||| |||| |||||| || | |||||| || || Sbjct 1766554 CGGAAGAGGTGGGATTTAAGGTCGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGGAATAC 1766495 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || |||||||||||||| |||||||| |||||||| || ||| Sbjct 1766494 ATTTCCGAGTGGATGTTTTCAATGGCGATTTGGAAGCCGTAGAAG 1766450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907921314107018