Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq37 91.5 1e-13 seq810 89.7 4e-13 seq865 86.0 5e-12 seq1435 84.2 2e-11 seq1663 82.4 6e-11 seq329 82.4 6e-11 >seq37 Length=1785839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || |||||||| |||| || |||||||| ||| | ||| || | Sbjct 885699 AAAATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCC 885758 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || ||| ||||| || ||||||||| | || ||| Sbjct 885759 TCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGAC 885818 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | || || | || || |||||| |||| || | | |||| | || |||||| Sbjct 885819 CAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTAC 885878 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || ||||| ||||| | ||| ||||| Sbjct 885879 AACATCCAGAAGGAATCTACTCTCCACTTGGTG 885911 >seq810 Length=562993 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || ||||| ||| | || |||| ||| Sbjct 115532 ATGCAGATTTTTGTCAAGACCCTCACCGGAAAGACCATCACCTTAGAGGTGGAGAGCTC- 115474 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||| ||| ||||| || || | ||| || || Sbjct 115473 CGACACCATTGACAATGTCAAGGCAAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCA 115414 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| |||||||| || || ||||| | | || |||| |||||||| Sbjct 115413 GCAGAGGTTGATTTTCGCGGGTAAGCAACTTGAGGATGGCCGTACTTTGGCTGACTACAA 115354 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | ||| ||||| Sbjct 115353 CATCCAGAAGGAGTCTACCCTTCACCTGGTG 115323 >seq865 Length=406355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| |||||||| || || ||||| || |||||| | || ||| | Sbjct 6329 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACTATTACCTTGGAGGTTGAGAGTTCA 6270 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || |||||| | ||| || ||| Sbjct 6269 GACACCATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCCCCAGACCAG 6210 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || || ||||| || || | | || |||| ||||||||| Sbjct 6209 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACTTTGGCTGACTACAAC 6150 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 6149 ATCCAGAAGGAGTCTAC 6133 >seq1435 Length=543809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || ||||| |||| || |||||||| ||| | ||| ||| | Sbjct 91726 AATGCAAATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTGGAATCCTC 91785 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || ||| ||||| || ||||| || | || ||| || Sbjct 91786 CGATACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCGGACCA 91845 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | || || || || | ||||| | | |||| | || || ||||| Sbjct 91846 GCAACGCCTGATCTTCGCCGGGAAGCAATTAGAGGATGGAAGAACACTCGCCGATTACAA 91905 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||| || || | ||| ||||| Sbjct 91906 CATTCAGAAGGAATCGACCCTTCACTTGGTG 91936 >seq1663 Length=237253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| |||| || |||||||| ||| | || || | Sbjct 10208 AAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTAGAATCC 10267 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| ||||| || || |||||| | ||| || Sbjct 10268 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGAC 10327 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | || || |||||||| || |||| ||| | || |||||| Sbjct 10328 CAGCAGCGTCTTATCTTCGCCGGAAAACAGCTTGAAGACGGACGCACACTTGCCGACTAC 10387 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || ||||||||||| Sbjct 10388 AACATCCAGAAGGAGTCTAC 10407 >seq329 Length=298387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 107640 AAGATTGCCGATAAAGAAGG-CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAA 107698 |||||| |||||||||||| ||| | | ||||| || ||||| || | ||| || || Sbjct 180169 AAGATTCACGATAAAGAAGGTATTGCACCT-GATCAACAAAGACTCATCTTTGCTGGGAA 180227 Query 107699 ACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 |||| | ||||| | | ||| | || ||||| || ||||||||||||||||| |||| Sbjct 180228 ACAGTTAGAGGATGGTAGAACTCTTGCAGACTATAATATTCAAAAGGAGTCTACTCTGCA 180287 Query 107759 CATGGTGTTGAGATTGCGAGGGGG 107782 |||| | | ||| |||| || Sbjct 180288 TTTGGTACTTCGTTTGAGAGGTGG 180311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398496344078518