Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq2376 91.5 5e-14 seq1956 91.5 5e-14 seq48716 86.0 2e-12 seq3246 82.4 3e-11 >seq2376 Length=71071 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 39415 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 39356 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 39355 TGCTCTACCCCGC 39343 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 63753 TTGCGGAGATAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 63694 Query 50171 TGCTCTACTCCG 50182 |||||||| ||| Sbjct 63693 TGCTCTACCCCG 63682 >seq1956 Length=119694 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 27846 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 27787 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 27786 TGCTCTACCCCGC 27774 >seq48716 Length=828 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| || ||||||| ||| Sbjct 589 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCAAGCTACCAAAC 648 Query 50171 TGCTCTACTCCG 50182 |||||||| ||| Sbjct 649 TGCTCTACCCCG 660 >seq3246 Length=44896 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 ||||| || | ||||||||||||| | |||| | | ||||||||| |||||||||| ||| Sbjct 10968 TTGCGAAGACAGGATTTGAACCCGTGACCTCAATGTTATGAGCCTTGCGAGCTACCAAAC 11027 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 11028 TGCTCTACCCCGC 11040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181434425023044