Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq20 123 2e-23 seq810 113 4e-20 seq865 111 2e-19 seq1663 109 5e-19 seq909 105 6e-18 seq37 91.5 1e-13 >seq20 Length=1286389 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || ||||| || ||||| ||| | | || || || || || |||||||| | Sbjct 250533 GTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCG--TCTTCAAGCTGCTTTC 250476 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| ||||||||||||||||| || |||||| || Sbjct 250475 CGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCT 250416 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || |||| || || || || | ||| | |||||| || || || | Sbjct 250415 TGACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGG 250356 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 250355 TTTTCACGAAAATCTGCAT 250337 >seq810 Length=562993 Score = 113 bits (124), Expect = 4e-20 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || ||| || | | | ||||| || ||||| | Sbjct 115335 GGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCA-TCCTCAAGTTGCTTAC 115393 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 ||||| |||| | || ||||||||| || || || || ||||| || ||| |||||| Sbjct 115394 CCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC-TGAATTTTTGCC 115452 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||||| | |||||| || | ||||| ||| || ||||| || Sbjct 115453 TTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAAGGTGATGGTCTTTCCGGTGAGG 115512 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 115513 GTCTTGACAAAAATCTGCAT 115532 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| ||||||||||| | | || | ||||| ||| Sbjct 115099 AAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGC 115158 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | || ||||||||| || || ||||| |||||||| ||| Sbjct 115159 TGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATC 115218 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | ||||| | | ||| || || | |||| ||| || || Sbjct 115219 TTCGCCTTAACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAACGTGATGGTCTTTCCC 115278 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 115279 GTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||||||| ||| || | ||||| || ||||| || Sbjct 114879 GGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCC 114938 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||||||| || ||||| || |||||||| |||||| ||| Sbjct 114939 AGCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTT 114998 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||| || | | |||||| || | ||||| ||| || ||||||| || Sbjct 114999 AACATTATCAATCGTATCAGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGT 115058 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 115059 CTTCACAAAAATCTGCAT 115076 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | | || | | | ||||||||||| || || Sbjct 115792 GTTGACTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCA-TCCTCGAGCTGTTTTCC 115850 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| |||||||| || || || || ||||| || ||| || ||| Sbjct 115851 GGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATTTTAGCCTT 115910 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||||| || || |||| ||||| |||||| || || || || Sbjct 115911 GACGTTGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGT 115970 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 115971 TTTCACGAAGATCTGCAT 115988 >seq865 Length=406355 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| || || ||||||||||| | | || | || || ||| Sbjct 5896 AAATGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCTTCAAGC 5955 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||| ||||||||| || ||||||||||||||||| |||| Sbjct 5956 TGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATC 6015 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | ||| || || | ||| | || ||||| Sbjct 6016 TTGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTGCCA 6075 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 6076 GTCAAGGTCTTGACGAAAATCTGCAT 6101 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || ||| || | | | || || |||| Sbjct 6126 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCA-TCTTCAAGCT 6184 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| | || ||||||||| || ||||||||||||||||| |||| Sbjct 6185 GCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATCT 6244 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||| | ||| || || | ||| | || ||||| | Sbjct 6245 TGGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTGCCAG 6304 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||||||||| Sbjct 6305 TCAAGGTTTTGACGAAAATCTGCAT 6329 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| ||| ||| ||| | ||||| || || || | Sbjct 5676 GGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA-TCCTCAAGTTGTTTCC 5734 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| || ||||| || |||||||| |||||| || Sbjct 5735 CAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCT 5794 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| |||||| | | ||| || || | ||||| ||| || || |||| | Sbjct 5795 TCACATTATCAATCGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTACCAGTCAAGG 5854 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 5855 TCTTCACAAAAATCTGCAT 5873 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| ||| | | | | ||| |||||||||||| || | Sbjct 7437 GTTGACTCTTTCTGGATGTTGTAGTCGGC--TAGGGTACGGCCGTCCTCGAGCTGTTTCC 7494 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || || || || ||||| || |||||| | Sbjct 7495 CGGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTTAGCTT 7554 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| ||| || |||| |||| ||| |||||||| || | Sbjct 7555 TGACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGG 7614 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 7615 TTTTCACGAAGATTTGCAT 7633 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || ||| || | | | || || |||| Sbjct 6354 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCA-TCTTCAAGCT 6412 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | || ||||||||| || ||||| |||||||| || ||| | Sbjct 6413 GCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGGATTT 6472 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||||| | |||||| || | ||||| ||| || || | Sbjct 6473 TGGCCTTTACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTG 6532 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||||||||| Sbjct 6533 TAAGAGTCTTAACAAAAATCTGCAT 6557 >seq1663 Length=237253 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | | ||| ||| || ||||| || || Sbjct 10408 GGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCC 10349 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| |||||| || Sbjct 10348 GGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTT 10289 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | || || || || | ||| | |||||| ||||| || || Sbjct 10288 CACATTGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGT 10229 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 10228 TTTCACGAAGATCTGCAT 10211 >seq909 Length=350832 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || || || || ||||||||| | | || || || || || ||||| || | Sbjct 176306 GTTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCG--TCTTCAAGCTGTTTTC 176363 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || |||||||| || ||||||||||||||||| |||||| | Sbjct 176364 CGGCGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTT 176423 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| || || || || | ||| | |||||| || || || | Sbjct 176424 TGACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGG 176483 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 176484 TTTTCACGAAAATCTGCAT 176502 >seq37 Length=1785839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | ||| || || ||| | ||||| || || ||||| || ||||||||||| ||| Sbjct 885856 TCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTG 885797 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | || | ||||||| || || || || | ||| | | Sbjct 885796 TCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGGGTTATG 885737 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || ||||| ||||| |||||||| Sbjct 885736 GTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482947881516880