Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1663 107 1e-18 seq909 96.9 2e-15 seq865 96.9 2e-15 seq37 93.3 3e-14 seq329 89.7 3e-13 seq1435 86.0 4e-12 seq1099 84.2 1e-11 >seq1663 Length=237253 Score = 107 bits (118), Expect = 1e-18 Identities = 153/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||||||||| |||| || | ||||||||||| || Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| ||| | || | ||||| ||||| || || |||| |||| Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTC-ACAT 10284 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| ||||| || || | || || ||||| || |||| ||||| | Sbjct 10283 TGTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCA 10224 Query 33737 CAAAGATCTGCATAGTT---GGTGTGTTTATC 33765 | ||||||||||| || | ||||||| || Sbjct 10223 CGAAGATCTGCATTTTTTGGGTTGTGTTTCTC 10192 >seq909 Length=350832 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| || | ||| | |||| || || || || ||||| ||||||||||||| Sbjct 176274 CACCACCCCTAAGACGAAGAACCAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCGG 176333 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || |||| || | ||||||||||| || || | ||| ||||| ||| | | Sbjct 176334 CTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTG 176393 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | || |||| ||| | ||| ||| ||||| Sbjct 176394 GGATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACATTGTCGATGGTATCGGAGGATTCA 176452 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| || |||| ||||| || || |||||||| Sbjct 176453 ACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 176502 >seq865 Length=406355 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| ||| || || |||||||| |||| Sbjct 6558 ACCACCACGAAGACGAAGGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 6617 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 6618 TAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 6677 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || | | || | ||| | ||||||| ||| | Sbjct 6678 AATACCTTCCTTATCTTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 6736 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||||| || || ||||||||||||||| Sbjct 6737 CCTCGAGGGTGATGGTCTTCCCTGTTAGAGTCTTCACAAAGATCTGCATA 6786 >seq37 Length=1785839 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || ||||| || || || |||||||| |||| Sbjct 885928 CCACCACGAAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCA 885869 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || ||||| ||||||||||| || || | || || || || | || Sbjct 885868 AGTGTTCTTCCATCTTCCAACTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGG 885809 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || || | ||| | |||||| ||||| || Sbjct 885808 ATGCCTTCTTTGTCTTGGATCTT-GGCTTTGACGTTGTCGATTGTGTCGGAGGATTCTAC 885750 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 885749 TTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 885702 >seq329 Length=298387 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | |||||||| ||||| ||| ||||| || || || || | Sbjct 180311 CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCA 180252 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || || ||||| || ||||| || | | || ||||| | | Sbjct 180251 AGAGTTCTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGTGCA 180192 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| ||| ||| || || | ||||| || | ||||| | ||| || Sbjct 180191 ATACCTTCTTTATCGTGAATCTT-GGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAAC 180133 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || ||||| || | || || |||||||||||||| Sbjct 180132 CTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 >seq1435 Length=543809 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || || || || || ||||||||||||| | Sbjct 91953 CCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCG 91894 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || ||||| || ||||| || |||| || ||||| || | || Sbjct 91893 AGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGG 91834 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || | || || | ||| | || ||| |||||||| Sbjct 91833 ATTCCCTCTTTGTCTTGGATCTT-GGCTTTGACGTTGTCGATTGTATCGGAGGATTCCAC 91775 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | || || ||||| || |||| ||||| || || || ||||| || Sbjct 91774 TTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATTTGCATTGT 91724 >seq1099 Length=206994 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||| | ||| || || ||| || || ||||||||||| | | Sbjct 75127 CCACCCCTTAGACGGAGCACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCG 75068 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||| ||||||||||| |||| ||| ||||| ||| | || Sbjct 75067 AGGGTACGTCCATCCTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGA 75008 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || || | ||||| ||| | |||||| || || Sbjct 75007 ATTCCCTCTTTATCTTGGATCTT-GGTCTTAACATTGTCAATAGTGTCGGAACTCTCAAC 74949 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | || || || ||||| ||||| Sbjct 74948 CTCCAGAGTTATAGTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 74901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328390476167040