Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq52 345 1e-90 seq119 235 2e-57 seq1 134 4e-27 seq1508 120 9e-23 seq219 120 9e-23 >seq52 Length=1114353 Score = 345 bits (382), Expect = 1e-90 Identities = 499/696 (72%), Gaps = 6/696 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| | | || ||| || | Sbjct 279527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACTGCAAC 279469 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| |||| ||||| || |||||||| || || || Sbjct 279468 TTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGA 279409 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || ||||| || ||||| ||||| || || || | ||| ||| | |||| | Sbjct 279408 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTAC 279349 Query 19711 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770 | || || || | ||||| || ||||| |||||||| || ||||||| || Sbjct 279348 TTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTG 279289 Query 19771 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC 19830 | | ||||| || || || | |||| | || | |||||| | |||| | | Sbjct 279288 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 279229 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| ||||| || |||||||||||||| | || ||||| ||| | ||||||||| ||| Sbjct 279228 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGT 279169 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| ||||||| || |||| || ||||| | ||||||| | |||| Sbjct 279168 TGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGT-TTTCTTGATCTACCCAATCGGTC 279110 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || | ||| || |||| ||||||| | | ||||| |||| ||||||| ||| | Sbjct 279109 AAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATTA 279050 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||||| || || | ||||| || |||||||| || |||||| | ||||| | ||||| Sbjct 279049 TATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTG 278990 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 |||||||||| || ||||| ||||| ||||| ||||| |||| || | || | ||| | Sbjct 278989 TATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATT 278931 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || || | ||| | || | ||||||| || || ||||| ||||| Sbjct 278930 AGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAA 278871 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 || ||||| |||||||| ||||||||||| |||||| Sbjct 278870 ACTTATAATATCGTAGCTGCTCATGGTTATTTTGGA 278835 >seq119 Length=805478 Score = 235 bits (260), Expect = 2e-57 Identities = 246/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| | ||| || ||||| |||||||| ||||||||||| ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || |||||||||||||| ||| ||||||||| |||||| ||||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||| |||||||| |||| || || || ||| || | || Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || | || |||||||| || ||||| || | | || | | |||||||| ||| || Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 ||||||||||| || | || ||| |||| || | | | || ||||||||||| ||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 20462 GCTCATAACTTCCCACTTGACCT 20484 |||||||||||||| || ||||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCT 240752 Score = 233 bits (258), Expect = 6e-57 Identities = 351/494 (71%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 19628 GTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATC 19687 ||||| |||||||| || || ||||| || ||||| || ||||| |||| || || Sbjct 179543 GTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATATT 179602 Query 19688 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 19745 || |||| ||| | |||| | | ||| || || || ||||| || ||||| | Sbjct 179603 ATTTCGGCTGCCATTATTCCTACTTCTGCA--GCTATAGGGTGGCACTTTTATCCAATAT 179660 Query 19746 GGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19805 ||||||| | || ||||||| ||| | ||||| || || || | ||| | || Sbjct 179661 GGGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTC 179720 Query 19806 TCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGAC 19865 | |||||| | |||| | | ||| ||||| | |||||||||||||| | || Sbjct 179721 TACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTT 179780 Query 19866 TAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGG 19925 |||| ||| | |||| ||| |||||| || || ||||| ||||||| | |||| | Sbjct 179781 TAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTACTGCTG 179840 Query 19926 TCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 | ||||| | ||||||| | | ||| || | || || |||| ||||||| | || ||| Sbjct 179841 T-TTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATC 179899 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || | ||| ||||||| || | |||||||| || || || ||||| || |||||| | Sbjct 179900 TCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCA 179959 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| ||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 179960 TTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 180019 Query 20105 TCGCTTGTTACGTC 20118 || ||||| || || Sbjct 180020 TCCCTTGTAACTTC 180033 >seq1 Length=3292865 Score = 134 bits (148), Expect = 4e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20291 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 20350 || || ||||| |||||||| |||| || || || ||| ||||| || || | || Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 20351 GGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCT 20410 |||||||| || ||||| || | | || | | |||||||| ||| ||||||||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 20411 GACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAAC 20470 || || | || |||||||| || || | || || ||||||||||| |||||||||||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 20471 TTCCCACTTGACCTTGC 20487 ||||| || ||||| || Sbjct 1433604 TTCCCTCTAGACCTAGC 1433588 >seq1508 Length=419047 Score = 120 bits (132), Expect = 9e-23 Identities = 205/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| |||||| ||| | || ||| || | Sbjct 272729 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTGCAAC 272671 Query 19592 ATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 272670 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 272611 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA- 19709 ||| || ||||| || ||||| ||||| || || || ||||| ||| | |||| | Sbjct 272610 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTAC 272551 Query 19710 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| || ||||| |||||||| || ||||||| Sbjct 272550 TTCTGCA--GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAG 272493 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 19821 ||| | ||||| || || || | |||| | || | |||||| | |||| Sbjct 272492 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 272440 >seq219 Length=449544 Score = 120 bits (132), Expect = 9e-23 Identities = 205/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| |||||| ||| | || ||| || | Sbjct 176422 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTGCAAC 176364 Query 19592 ATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 176363 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 176304 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA- 19709 ||| || ||||| || ||||| ||||| || || || ||||| ||| | |||| | Sbjct 176303 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTAC 176244 Query 19710 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| || ||||| |||||||| || ||||||| Sbjct 176243 TTCTGCA--GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAG 176186 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 19821 ||| | ||||| || || || | |||| | || | |||||| | |||| Sbjct 176185 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 176133 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| |||||| ||| | || ||| || | Sbjct 175168 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTGCAAC 175110 Query 19592 ATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 175109 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 175050 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 ||| || ||||| || ||||| |||| ||||| || Sbjct 175049 ACCTGTTTCCGGATCTCTACTTTA-CGAAAAAACATAAT 175012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148690484280396