Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq52 306 1e-78 seq119 235 2e-57 seq1 136 1e-27 seq1508 114 4e-21 seq219 111 5e-20 >seq52 Length=1114353 Score = 306 bits (338), Expect = 1e-78 Identities = 488/695 (70%), Gaps = 4/695 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| | | || ||| || | Sbjct 279527 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACTGCAAC 279469 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| | || ||||| || |||||||| || || || Sbjct 279468 TTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGA 279409 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| | ||| ||| || || ||||| || || || | ||| ||| | | || | Sbjct 279408 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTAC 279349 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 | || || || | ||||| || ||||| |||||||| || ||||||| || Sbjct 279348 TTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTG 279289 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 | | ||||| || || || | |||| | || | |||||| | |||| || | Sbjct 279288 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 279229 Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||| ||||| || |||||||||||||| | || ||||| ||| | || |||||| ||| Sbjct 279228 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGT 279169 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| || ||||| || |||| ||| |||| |||||| | |||||||| ||||||| Sbjct 279168 TGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 279109 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||| ||| || | |||||| | | || || || | ||||||| ||| | | Sbjct 279108 AGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATTAT 279049 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 ||||| || || | ||||| || |||||||| || |||||| | || || | ||| || Sbjct 279048 ATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGT 278989 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGC 29257 ||||||||||| ||||||||||| ||||| ||||| |||| | | || | ||| | Sbjct 278988 ATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATTA 278930 Query 29258 GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGA 29317 | || || || || | ||| || | ||||||| || || ||||| ||||| | Sbjct 278929 GGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 278870 Query 29318 CTTATAACATCGTAGCCGCTCACGGTTACTTTGGA 29352 ||||||| |||||||| ||||| ||||| |||||| Sbjct 278869 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGA 278835 >seq119 Length=805478 Score = 235 bits (260), Expect = 2e-57 Identities = 246/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| | ||| |||||||| |||||||| ||||| ||||| ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||||||||||| |||||| || |||||| ||||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| |||||||| |||| || || || ||| || | || Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || | || ||||| || || ||||| || | | || | | |||||||| |||||| Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| | | || || ||||||| | | |||| |||||||| |||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 29590 GCTCATAACTTCCCACTTGATCT 29612 |||||||||||||| || || || Sbjct 240730 GCTCATAACTTCCCTCTAGACCT 240752 Score = 208 bits (230), Expect = 2e-49 Identities = 343/493 (70%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 28756 GTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATC 28815 ||||| |||||||| || || |||||||| | ||| ||| || || |||| || || Sbjct 179543 GTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATATT 179602 Query 28816 ATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 28873 || |||| ||| | | || | | ||| || || || ||||| || ||||| | Sbjct 179603 ATTTCGGCTGCCATTATTCCTACTTCTGCA--GCTATAGGGTGGCACTTTTATCCAATAT 179660 Query 28874 GGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 28933 ||||||| | || ||||||| ||| | ||||| || || || | ||| | || Sbjct 179661 GGGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTC 179720 Query 28934 TCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGAC 28993 | |||||| | |||| || | ||| ||||| | |||||||||||||| | || Sbjct 179721 TACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTT 179780 Query 28994 TAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGG 29053 |||| ||| | || | ||| ||| ||||| || ||||| || |||| | |||| | Sbjct 179781 TAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTACTGCTG 179840 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 ||||| | |||||||| ||| |||||| | | | || | |||||| | || || | Sbjct 179841 TTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCT 179900 Query 29114 CAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGT 29173 | | || ||||||| || | || ||||| || || || ||||| || |||||| | | Sbjct 179901 CCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCAT 179960 Query 29174 TCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTT 29233 | |||||| | || || |||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 179961 TTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 180020 Query 29234 CGCTTGTCACGTC 29246 | ||||| || || Sbjct 180021 CCCTTGTAACTTC 180033 >seq1 Length=3292865 Score = 136 bits (150), Expect = 1e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 29419 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 29478 || || ||||| |||||||| |||| || || || ||| ||||| || || | || Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 29479 GGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCT 29538 ||||| || || ||||| || | | || | | |||||||| ||||||||||||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 29539 GATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAAC 29598 ||| | | || || |||||||| || | ||||| |||||||| ||||||||||||||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 29599 TTCCCACTTGATCTGGCT 29616 ||||| || || || ||| Sbjct 1433604 TTCCCTCTAGACCTAGCT 1433587 >seq1508 Length=419047 Score = 114 bits (126), Expect = 4e-21 Identities = 219/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| |||||| ||| | || ||| || | Sbjct 272729 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTGCAAC 272671 Query 28720 ATCTG-CTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 272670 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 272611 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA- 28837 |||||| | ||| ||| || || ||||| || || || ||||| ||| | | || | Sbjct 272610 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTAC 272551 Query 28838 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| || ||||| |||||||| || ||||||| Sbjct 272550 TTCTGCA--GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAG 272493 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | |||| | || | |||||| | |||| || | Sbjct 272492 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 272433 Query 28957 GCTTACATGGGACGCGAG 28974 ||| ||||| || ||| Sbjct 272432 TGTTATATGGGTCGTGAG 272415 >seq219 Length=449544 Score = 111 bits (122), Expect = 5e-20 Identities = 205/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| |||||| ||| | || ||| || | Sbjct 176422 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTGCAAC 176364 Query 28720 ATCTG-CTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 176363 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 176304 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA- 28837 |||||| | ||| ||| || || ||||| || || || ||||| ||| | | || | Sbjct 176303 ACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTAC 176244 Query 28838 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| || ||||| |||||||| || ||||||| Sbjct 176243 TTCTGCA--GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAG 176186 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT 28952 ||| | ||||| || || || | |||| | || | |||||| | |||| || Sbjct 176185 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 176130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146529294674652