Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq52 374 2e-99 seq119 259 1e-64 seq1508 154 4e-33 seq219 150 5e-32 seq1 141 3e-29 seq92 84.2 6e-12 >seq52 Length=1114353 Score = 374 bits (414), Expect = 2e-99 Identities = 521/722 (72%), Gaps = 6/722 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| |||||| | || ||||||||||| || || |||||||| || Sbjct 279554 TTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 279495 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| | | || ||| | || ||| | ||| || ||||| |||||||||||| | | Sbjct 279494 ATGATCTC-TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTACTC 279437 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 279436 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATA 279377 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAA 18961 | || || | ||| ||| | |||| | | || || || | ||||| || |||| Sbjct 279376 ATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAA 279317 Query 18962 TTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGG 19021 | |||||||| || ||||||| ||| | ||||| || || || | |||| | | Sbjct 279316 TATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTG 279257 Query 19022 TCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATC 19081 | | |||||| | |||| || | ||| ||||| || |||||||||||||| | | Sbjct 279256 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 279197 Query 19082 GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTG 19141 | ||||| ||||||||||||||| |||||| || || ||||| ||||| | || ||| Sbjct 279196 GTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTG 279137 Query 19142 CGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTA 19201 | || ||| | |||| ||| | |||||||| |||| || | ||||||| | | | Sbjct 279136 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAA 279077 Query 19202 TTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACC 19261 | ||||| ||||||| ||| || ||||||||||||| | |||||||| ||||||| Sbjct 279076 TCTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACC 279017 Query 19262 CGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACG 19321 | || |||||| | ||||| | |||||| ||||| || || ||||||||||| ||||| | Sbjct 279016 CATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATG 278957 Query 19322 GTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTAT 19380 |||| |||| || | || | ||| | | ||||| || || | | |||| || | Sbjct 278956 GTTC-CTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAA 278898 Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| || || ||||| ||||| |||||||| || || ||||||||||| |||||| Sbjct 278897 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 278838 Query 19441 GG 19442 || Sbjct 278837 GG 278836 >seq119 Length=805478 Score = 259 bits (286), Expect = 1e-64 Identities = 431/618 (70%), Gaps = 20/618 (3%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| |||||| || || ||||||||||| || || ||||||| Sbjct 179432 TTCTGTAATTGGATAACCAACACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTCT 179491 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTC-ATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||| || Sbjct 179492 ATGATCCC-TACCTTATTGACTGCAACT-TCTGTATCCATTATAGCCTTCATTGTTG--- 179546 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 | |||||||| || || || ||||| | || ||| ||||| |||| | Sbjct 179547 ---------ATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATA 179597 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || |||| ||| | |||| | | ||| || || || ||||| || || Sbjct 179598 ATATTATTTCGGCTGCCATTATTCCTACTTCTGCA--GCTATAGGGTGGCACTTTTATCC 179655 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| | || ||||||| ||| | ||||| || || || | ||| | Sbjct 179656 AATATGGGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAAT 179715 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||| ||||| | |||||||||||||| | Sbjct 179716 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTT 179775 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || |||| |||||||||| ||| |||||| || || ||||| ||||| | | | | Sbjct 179776 CCGTTTAGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTAC 179835 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | |||| ||| | | |||||| ||| | || | ||||||| | || Sbjct 179836 TGCTGTTTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGG 179895 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 || | ||| ||||||| || |||||||||||||||| || |||||||| ||||| Sbjct 179896 AATCTCCGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 179955 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 | | || |||||| | ||||| ||||||| |||||||| || ||||||||||| ||||| Sbjct 179956 CTCATTTCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 180015 Query 19320 CGGTTCGCTTGTTACGTC 19337 ||||| ||||| || || Sbjct 180016 TGGTTCCCTTGTAACTTC 180033 Score = 212 bits (234), Expect = 2e-50 Identities = 239/320 (75%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| || || ||||| | ||| |||||||| || || ||||||||||| |||||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 ||||| | || ||||| || || |||||||| |||||| |||| ||||| || Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| || || ||||||||| | || | || | || || || | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 || || ||||| || || || ||||| || | |||| | | |||||||| ||| || Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 ||||||||||| || | || ||| ||||||| | | | || ||||| ||||||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 19681 GCTCATAACTTCCCACTTGA 19700 |||||||||||||| || || Sbjct 240730 GCTCATAACTTCCCTCTAGA 240749 >seq1508 Length=419047 Score = 154 bits (170), Expect = 4e-33 Identities = 246/346 (71%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 272756 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 272697 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 272696 ATGATCCC-TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 272639 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 272638 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATA 272579 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || ||||| ||| | |||| | | ||| || || || | ||||| || || Sbjct 272578 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCC 272521 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||| ||| | ||||| || || || | |||| | Sbjct 272520 AATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAAT 272461 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAG 19065 || | |||||| | |||| || | ||| ||||| || ||| Sbjct 272460 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 272415 >seq219 Length=449544 Score = 150 bits (166), Expect = 5e-32 Identities = 232/324 (72%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 176449 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 176390 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 176389 ATGATCCC-TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 176332 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 176331 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATA 176272 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || ||||| ||| | |||| | | ||| || || || | ||||| || || Sbjct 176271 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCC 176214 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||| ||| | ||||| || || || | |||| | Sbjct 176213 AATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAAT 176154 Query 19020 GGTCTTCCACTTCCTCATTGGCGT 19043 || | |||||| | |||| || Sbjct 176153 TGTTCTACACTTCTTACTTGGTGT 176130 Score = 113 bits (124), Expect = 1e-20 Identities = 141/187 (75%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 175195 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 175136 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 175135 ATGATCCC-TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 175078 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| |||| | Sbjct 175077 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTA-CGAAAAA 175019 Query 18902 ACATCAT 18908 |||| || Sbjct 175018 ACATAAT 175012 >seq1 Length=3292865 Score = 141 bits (156), Expect = 3e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 ||||| || || ||||||||| | || | || | || || ||||| |||||||| ||| Sbjct 1433784 CCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAAT 1433725 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || || || ||||| || | |||| | | |||||||| ||| ||||||||||| Sbjct 1433724 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 1433665 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 || || | || ||||||||||| || | || || ||||| |||||||||||||||||| Sbjct 1433664 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1433605 Query 19690 TTCCCACTTGA 19700 ||||| || || Sbjct 1433604 TTCCCTCTAGA 1433594 >seq92 Length=859423 Score = 84.2 bits (92), Expect = 6e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 18826 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGT 18885 |||||||||||||| ||||| ||||| |||||||| || || ||||||||| | || | Sbjct 848452 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCCGGATCT 848511 Query 18886 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926 || |||| ||||| || || || ||||| ||| | |||| Sbjct 848512 CTAGTTTACGGAAATAATATTATTTCGGGTGCCATTATTCC 848552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141017621774796