Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq909 87.8 2e-12 seq20 87.8 2e-12 seq329 86.0 6e-12 >seq909 Length=350832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || ||||| |||||||| ||| | ||| || ||||| |||||||| |||| Sbjct 176307 TTGATTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGG 176366 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||| || || ||||| || |||||||| || || || || ||| | Sbjct 176367 CGAAGATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGA 176426 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||||| | || || || | || | ||||| ||||| || |||| Sbjct 176427 CATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTTT 176486 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||||||||| Sbjct 176487 TCACGAAAATCTGCAT 176502 >seq20 Length=1286389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || || |||||||||||| | ||| || ||||| ||||| || |||| Sbjct 250532 TTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGG 250473 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| || |||||||| |||||||| ||||| || || || | Sbjct 250472 CGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGA 250413 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||||| | || || || | || | ||||| || || || |||| Sbjct 250412 CATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTT 250353 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||||||||| Sbjct 250352 TCACGAAAATCTGCAT 250337 >seq329 Length=298387 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | |||| || |||||||||||||| || | ||| | ||| || Sbjct 180066 AACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTC 180007 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||| | | ||||||| | ||||||||||||||| || |||||||| || Sbjct 180006 GAGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTC 179950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476144943178320