Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq66 233 3e-55 seq40 228 1e-53 >seq66 Length=1001823 Score = 233 bits (258), Expect = 3e-55 Identities = 371/525 (71%), Gaps = 13/525 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| ||| |||| | || ||||| |||||| || ||||| || |||||||| Sbjct 952526 TGTTCCCAATCAAATACCCACAAATCTGGGAGATGTAC-AAGAAGGCTGAAGCCTCCTTC 952584 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTC---GCTGAG 1455868 ||||| || || || || |||||| |||| | ||| | |||| | ||| | Sbjct 952585 TGGACAGCGGAAGAAGTAGACCTCTCACAAGACAACCGTC-ATTGGGAAACCGCGCTCAC 952643 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 || |||||||| || || |||| || |||||||||| || ||||||| ||| |||| Sbjct 952644 CGCCGACGAGCAACACTTTATCACCCATATCCTCGCCTTCTT-CGCCGCCTCCGACGGCA 952702 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 | || || || || |||||| | || |||||||||||||| | | ||||| || Sbjct 952703 TAGTCCTAGAAAATCTCGCCGGCAGATTCATGAAAGAGGTCCAGGTTGCTGAGGCGCGCG 952762 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||||||||| || || ||||||||||||||||| |||| ||||| ||||| Sbjct 952763 CCTTCTACGGGTTCCAAATAGCAATCGAAAACATCCACTCCGAAATGTACTCTCTCCTCC 952822 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 | || |||||| |||| ||| | | || ||||||||| || || ||||| || Sbjct 952823 TAGAAACCTACATCAAAGACTCAGAGCTTAAATCCCACCTCTTCCGAGCAATCGAGACCA 952882 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | |||| ||| || || || ||||| | ||||| || || | Sbjct 952883 TCCCCTGCGTGAAGAAGAAAGCGGAGTGGGCCCTCCGATGGATTGAC-----GGCGCAGA 952937 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | |||||||||| |||| | | || || |||| || || ||||| ||||| || || Sbjct 952938 ATGCTTTGCCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGAAG 952997 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| |||| || |||||||| |||||||| | |||||||| Sbjct 952998 TTTCTGCTCCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGG 953042 >seq40 Length=1826671 Score = 228 bits (252), Expect = 1e-53 Identities = 370/525 (70%), Gaps = 13/525 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| ||| || | | || |||||||||||| | |||| | || |||||||| Sbjct 1766212 TGTTCCCAATCAAATATCCACAAATCTGGGAAATGTACAAGAAAG-CTGAAGCCTCCTTC 1766270 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG----TCGCTGAG 1455868 |||||||| || || ||||| ||| | |||| |||||||| || || | Sbjct 1766271 TGGACCGCGGAAGAAGTCGATCTCTCAGAGGACAACCGCCACTGGGAAAACATC-CTCAC 1766329 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 || |||||||| || ||||||| ||| |||||||||| || ||||||| || |||| Sbjct 1766330 CGCCGACGAGCAACACTTCATCACCCACATCCTCGCCTTCTT-CGCCGCCTCTGACGGCA 1766388 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||| || || ||||| | || |||||||| ||||| | ||||||| || Sbjct 1766389 TCGTCCTCGAAAATCTCGCCGGAAGATTCATGAAAGACGTCCAGGTAGCAGAGGCGCGCG 1766448 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| ||||| |||||||| |||||||||||||| |||| || || ||||| Sbjct 1766449 CCTTCTACGGCTTCCAAATCGCCATTGAAAACATCCACTCGGAAATGTATTCCCTCCTCT 1766508 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 | || |||||| |||| ||| | | | || ||||||||| ||||| ||||| || Sbjct 1766509 TAGAAACCTACATCAAAGACTCCGACCTTAAATCCCACCTCTTCCGCGCAATCGAGACCA 1766568 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 | || | |||| ||| || || || ||||| | |||||| || |||| | Sbjct 1766569 TCCCCTGTGTGAAGAAGAAAGCAGATTGGGCCCTCCGATGGATCGAC--GGAG---CAGA 1766623 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | ||| ||||| | || | | || || | || || || || || ||||| || || Sbjct 1766624 ATCCTTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAG 1766683 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||| |||| || ||||| || |||||||| | |||||||| Sbjct 1766684 CTTCTGCTCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGG 1766728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170262686254444