Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq865 140 3e-28 seq810 131 2e-25 seq1099 114 1e-20 seq20 107 2e-18 seq909 98.7 9e-16 seq1663 91.5 1e-13 seq1435 87.8 2e-12 >seq865 Length=406355 Score = 140 bits (154), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| |||||||| || | || || || || || || ||||| Sbjct 5682 CTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGTTGTTTCCCAGCAAA 5741 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 5742 GATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATT 5801 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| || ||||||| ||||| || ||||| ||||| || || Sbjct 5802 ATCAATCGTGTCCGAGCTC---TCAACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTT 5858 Query 35722 CACAAATATCTGCATTC 35738 |||||| |||||||||| Sbjct 5859 CACAAAAATCTGCATTC 5875 >seq810 Length=562993 Score = 131 bits (144), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| |||||||| ||| | || || || ||||| || ||||| Sbjct 114885 CTCCTTCTGAATGTTGTAATCAGCCAAGGTACGCCCATCCTCAAGTTGCTTCCCAGCAAA 114944 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 114945 GATCAATCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 115004 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||| || |||| |||||||| | ||||| || || || ||||| || || Sbjct 115005 ATCAATCGTATCAGAGCTC---TCCACCTCTAGGGTGATGGTCTTTCCGGTCAAGGTCTT 115061 Query 35722 CACAAATATCTGCATTC 35738 |||||| |||||||||| Sbjct 115062 CACAAAAATCTGCATTC 115078 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||| || || || |||||||| || | || | | | || ||| Sbjct 115096 ACCAAGTGAAGGGTAGACTCTTTCTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCC 115155 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || ||||||| ||||||||| | |||| || ||||||||| Sbjct 115156 AGCTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGA 115215 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| |||| || ||||||| |||||| || Sbjct 115216 ATCTTCGCCTTAACATTGTCGATGGTGTCTGAGCTC---TCAACCTCCAACGTGATGGTC 115272 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || |||||||| Sbjct 115273 TTTCCCGTCAAGGTCTTGACGAAAATCTGCAT 115304 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || ||||| || || | || || Sbjct 115323 CACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCCTC 115382 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||||||||| || ||||||| ||||||||| | |||| | |||||| ||| | Sbjct 115383 AAGTTGCTTACCCGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC-T 115441 Query 35647 GATCTTTTG-CTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCG 35702 || ||||| ||| | | | | | ||||| |||| |||||||| | ||||| | Sbjct 115442 GAATTTTTGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCCACCTCTAAGGTGATGG 115498 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || | || || ||||| |||||||| Sbjct 115499 TCTTTCCGGTGAGGGTCTTGACAAAAATCTGCAT 115532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | ||||| | || || ||||| || || || || Sbjct 115797 CTCCTTCTGGATGTTGTAATCGGCAAGAGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAA 115856 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||| | |||| | |||||| || ||| ||| || | || Sbjct 115857 GATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGAT-TTTAGCCTTGACGT 115915 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||| || || | ||||| ||||| || || | ||||||| Sbjct 115916 TGTCAATGGTGTCGGAACTTTCGACTTCGAGGGTGATGGTTTTTCCAGTGAGGGTTTTCA 115975 Query 35724 CAAATATCTGCATTC 35738 | || |||||||||| Sbjct 115976 CGAAGATCTGCATTC 115990 >seq1099 Length=206994 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| || | || || | || || |||||||| || ||||| Sbjct 75320 CTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 75261 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| |||||| || | |||| | |||||||||| ||||| ||| | | | Sbjct 75260 TATCAACCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTAACATT 75201 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||||| || || || || || |||||||| || Sbjct 75200 GTCAATTGTGTCTGAGCTC---TCAACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCTT 75144 Query 35722 CACAAATATCTGCAT 35736 |||||||||||||| Sbjct 75143 GACAAATATCTGCAT 75129 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||| || | || | | | || |||| ||||| || ||||| Sbjct 75548 CTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTCCCATCCTCCAATTGCTTTCCAGCAAA 75489 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || |||| |||||| || | |||| | |||||| ||| ||| ||| | ||| | | Sbjct 75488 GATTAACCTCTGCTGATCTGGGGGAATTCCCTCCTTATCC-TGAATTTTAGCCTTGACAT 75430 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||||| |||| || ||||||| || || || || || ||||| || | Sbjct 75429 TGTCAATGGTGTCTGAGCTC---TCAACCTCCAGAGTAATAGTCTTCCCAGTCAAGGTCT 75373 Query 35721 TCACAAATATCTGCATTC 35738 | || || |||||||||| Sbjct 75372 TGACGAAAATCTGCATTC 75355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| || | ||| || | || || || ||||| || ||||| Sbjct 75092 CTCCTTCTGGATGTTGTAATCAGCGAGGGTACGTCCATCCTCAAGTTGCTTTCCGGCAAA 75033 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||| | ||||| | ||| || || |||||| ||| | | | Sbjct 75032 GATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTATCTTGGATCTTGGTCTTAACATT 74973 Query 35665 TGCCACCGTGTCG---CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| ||| || ||||||| || || ||||| || || | ||| || Sbjct 74972 GTCAATAGTGTCGGAACTC---TCAACCTCCAGAGTTATAGTTTTTCCGGTAAGAGTCTT 74916 Query 35722 CACAAATATCTGCATTCTGT 35741 || || || |||| ||||| Sbjct 74915 GACGAAGATTTGCA-TCTGT 74897 >seq20 Length=1286389 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| | |||||| |||| || |||||||| || || || Sbjct 250527 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 250468 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||| | || ||||| || |||||| ||| | | | Sbjct 250467 ATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTGACATTG 250408 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| ||||| ||||| | || || ||||| ||||| | |||||||| Sbjct 250407 TCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTTTTCACG 250348 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 250347 AAAATCTGCATT 250336 >seq909 Length=350832 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||||||||| | |||||| |||| || ||||| || || || || Sbjct 176312 TCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGTTTTCCGGCGAAG 176371 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | || | || |||||||| |||||| || | | | Sbjct 176372 ATGAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTG 176431 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 176432 TCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACG 176491 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 176492 AAAATCTGCATT 176503 >seq1663 Length=237253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | || || |||| || ||||| || || || || Sbjct 10402 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGTCCGTCTTCAAGCTGTTTTCCGGCGAA 10343 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||| |||||| |||| | | Sbjct 10342 GATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATT 10283 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 10282 GTCGATTGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCAC 10223 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 10222 GAAGATCTGCATT 10210 >seq1435 Length=543809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||||| ||||||||||||||||| Sbjct 91953 CCACCACGAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCGGCG 91894 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || || | ||||| || || || |||| || |||||||||| || Sbjct 91893 AGTGTTCTTCCATCCTCTAATTGCTTCCCGGCGAAGATCAGGCGTTGCTGGTCCGGTGGG 91834 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||| ||||| |||| || |||| |||| | | || ||| |||||||| Sbjct 91833 ATTCCCTCTTTGTCTTGGATC-TTGGCTTTGACGTTGTCGATTGTATCGGAGGATTCCAC 91775 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | || || ||||| || || | |||||||| || || |||||| || Sbjct 91774 TTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATTTGCATTGTG 91723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450352599890960