Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq66 170 3e-37 seq752 118 1e-21 seq477 109 8e-19 >seq66 Length=1001823 Score = 170 bits (188), Expect = 3e-37 Identities = 506/773 (65%), Gaps = 17/773 (2%) Strand=Plus/Minus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 |||||||| ||||| || || || |||||| ||||| ||||| |||| || || Sbjct 953270 CTATCTGCGACAAACTCAATATACTGACTCATCAGCTCACAGTTCATCCCTACCAGCTTT 953211 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 || || || | ||||| | || || ||||| | || || ||| || || || Sbjct 953210 ACAGGCAGCGAATCCGTCACGAATTCACGCTCGATTGCCACCGCTTCTTCTACGATTGAC 953151 Query 39569 GTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCAGGCGAA 39624 ||| ||| |||| || | | || || ||| ||| ||||||||||| Sbjct 953150 TGGACTTTCTCCACACTTAGTTTCTTCTTCAACAAGCTGT----ACAGCAAGCAGGCGAA 953095 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||| || || || || |||| || | ||||| || || || | ||| ||||| Sbjct 953094 GTCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAATCCGGGCAT 953035 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCTT 39743 || || |||||||||||||| ||||||| |||| ||| ||| || |||||||| |||| Sbjct 953034 TAACCCGCGCTTTTTGAGCCAGAATATGG-AGCAGAAACTTCCGGAGAAGAAGATCCCTT 952976 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCT 39803 | || || || |||| || ||||| | | | | | | ||||| Sbjct 952975 CAACGCAAGCGAAAGCAATTAGCCTCTCGGCAAAGCATTCTGCGCCGTCAATCCATCGGA 952916 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 | ||||| || ||||||||||| || || || || || || || || ||||| | Sbjct 952915 GGGCCCACTCCGCTTTCTTCTTCACGCAGGGGATGGTCTCGATTGCTCGGAAGAGGTG-- 952858 Query 39864 GTTTTTCATCACTA--TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | ||| | | || ||||| | || || |||| | ||| |||||||| || || Sbjct 952857 GGATTTAAGCTCTGAGTCTTTGATGTAGGTTTCTAGGAGGAGAGAGTACATTTCGGAGTG 952798 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||||||| || || || || || ||||| || | || |||| || || ||||| Sbjct 952797 GATGTTTTCGATTGCTATTTGGAACCCGTAGAAGGCGCGCGCCTCAGCAACCTGGACCTC 952738 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | ||||| | || | |||||| ||||| || || ||||| || || || Sbjct 952737 TTTCATGAATCTGCCGGCGAGATTTTCTAGGACTATGCCGTCGGAGGCGGCGAAGAAGGC 952678 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT---TATTCCAGTCATTGAT 40098 | | ||| | ||||| | || || |||| || | | | ||| | | | | Sbjct 952677 GAGGATATGGGTGATAAAGTGTTGCTCGTCGGCGGTGAGCGCGGTTTCCCAATGACGGTT 952618 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 |||| ||| | ||||||||||| |||||||| || || || || ||||| |||||||| Sbjct 952617 GTCTTGTGAGAGGTCTACTTCTTCCGCTGTCCAGAAGGAGGCTTCAGCCTTCTTGTACAT 952558 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 | ||| || | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 952557 CTCCCAGATTTGTGGGTATTTGATTGGGAACATACAGAATCTATCTGGGTTTT 952505 >seq752 Length=99127 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | |||| | |||| || ||| |||| ||| || Sbjct 76763 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGAACAATGCC 76822 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| || ||| ||||||||||| | || || || || || ||| Sbjct 76823 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 76882 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || ||||| || ||| ||| | |||||| ||||| |||||||| || Sbjct 76883 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAAAGTGTCATAAAT 76942 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| |||| || | ||||| |||||| Sbjct 76943 CCCTTCAATGCTATCATCTTTCATATTGATCAGAAAGCAGCTA 76985 >seq477 Length=199787 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | |||| | |||| || ||| || | ||| || Sbjct 10372 TCCTCCTTGGTCAACATATCGTGCAGTATCATTAAACACTCGCAACATAGGGACAATGCC 10313 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| || ||| ||||||||||| | || || || || || ||| Sbjct 10312 ATTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 10253 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || ||||| || ||| ||| | |||||| |||| |||||||| || Sbjct 10252 AACCCCAATACCTCCAGCAGATTTGCTGATGACAGCACACTCCTTCAGAGTGTCATAAAT 10193 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| |||| || | ||||| |||||| Sbjct 10192 CCCTTCAATGCTATCATCTTTCATATTGATGAGAAAGCAGCTA 10150 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||| ||| ||||||| || || |||||||| | | ||||||||||| || Sbjct 12163 TAAAACTCTTCGATTGTAAATGTTGGATGTGTATGGTTCAAAGCACTCATTATTTCCGAG 12104 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 ||| || |||||||||||||||||||| ||||| | | |||||||| ||||| Sbjct 12103 AATCTGGCTTGTTGATGCAGTTGGCATAGGAGCCACAAGAAGTGAATTTCTAACACCAT 12045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686236814293680