Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20 104 2e-17 seq865 98.7 8e-16 seq329 98.7 8e-16 seq1099 82.4 6e-11 >seq20 Length=1286389 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || ||||||| ||||| || ||| Sbjct 250533 GTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCG 250474 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || ||||| ||||||| || Sbjct 250473 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTG 250414 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || |||||| ||||| ||||| | ||| ||||| || ||| Sbjct 250413 ACATTGTCAATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTTTTCCCCGTTAGGGTT 250354 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 250353 TTCACGAAAATCTGCAT 250337 >seq865 Length=406355 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | | | || |||| ||||||||||| ||| Sbjct 7437 GTTGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCGAGCTGTTTCCCG 7496 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| || || || || | |||||| ||||| |||||| ||| Sbjct 7497 GCGAAGATCAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTTAGCTTTG 7556 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || ||||| || | ||||| || || ||| Sbjct 7557 ACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTT 7616 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 7617 TTCACGAAGATTTGCAT 7633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || ||||||||| | | | || | ||||| Sbjct 6577 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCTTCA 6636 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || | | ||| || || || || | ||| || ||||| | Sbjct 6637 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 6696 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | |||||| || || || || | || Sbjct 6697 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTTC 6756 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||||||||| |||||| Sbjct 6757 CCTGTTAGAGTCTTCACAAAGATCTGCATA 6786 >seq329 Length=298387 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| || | ||||||||| | ||||| || ||||||||||| ||||| || Sbjct 180311 CCACCTCTCAAACGAAGTACCAAATGCAGAGTAGACTCCTTTTGAATATTATAGTCTGCA 180252 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | | || || | |||||| || || | ||||| | |||||||| || | Sbjct 180251 AGAGTT-CTACCATCCTCTAACTGTTTCCCAGCAAAGATGAGTCTTTGTTGATCAGGTGC 180193 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| ||||||||| |||||| | || | |||| | ||||| | | |||||| Sbjct 180192 AATACCTTCTTTATCGTGAATCTTGGTCTTAACATTTTCAATCGTGTCAGAAGTTTCAAC 180133 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || || || |||||||| ||||| Sbjct 180132 CTCAAGAGTAATGGTCTTACCAGTAAGGGTCTTAACAAAGATCTGCAT 180085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || |||||||| ||||| || | | | | | || ||| Sbjct 180065 ACTAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCAAGGGTTCTTCCATCCTCG 180006 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || | || || | ||||||||| || || | || ||||| || | Sbjct 180005 AGTTGTTTACCAGCAAAGATTAGCCTCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 179946 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | || || | || ||||||||||| || | ||| Sbjct 179945 ATCTTGGTCTTAACATTGTCAATTGTATCAGAACTCTCTACTTCTAGAGTGATTGTTTTC 179886 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||||||||| Sbjct 179885 CCTGTAAGTGTCTTCACAAAGATTTGCAT 179857 >seq1099 Length=206994 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || || || || ||||| | || ||||| || || || || || | ||||||||| Sbjct 75055 TCCTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTA 74996 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| | || | | || | |||||| | ||||| || ||||||||| Sbjct 74995 TCTTGGATCTTGGTCTTAACATTGTCAATAGTGTCGGAACTCTCAACCTCCAGAGTTATA 74936 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || ||||| || || ||||||||||| Sbjct 74935 GTTTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 74901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424529089867344