Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq752 113 6e-20 seq204 105 8e-18 seq43 105 8e-18 seq477 100 4e-16 seq40 89.7 6e-13 >seq752 Length=99127 Score = 113 bits (124), Expect = 6e-20 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || |||||||| |||||||||||||| ||||| | || || ||||| |||| || Sbjct 77082 TGGGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGGGAAGCATGGGTGAAC-CACCTCTG 77140 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || |||||| | | | || ||||| || ||| |||||| || | || Sbjct 77141 GGACATGAAGTGGTATGTTTTGATAGCCGACTCAATATCATCCTTGTGGATCCCAACAGC 77200 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| || || | |||| | | || ||| || || | |||| Sbjct 77201 AACCCTCATCAACATGTGTTGGGGTCTCTCCA-CAACAGCCCCTCGGACCTTTAAGAGAT 77259 Query 112119 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | || ||||||||||||||| ||||||| || || ||||| |||||| Sbjct 77260 ATGATC-TCTCAAGGGTTTTGAAACCAAAGAAATCATAATCAAAGTCCC 77307 >seq204 Length=519899 Score = 105 bits (116), Expect = 8e-18 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| |||||||| |||||||||||| | Sbjct 246936 AAACCCATCCATCTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTTCC--A 246993 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || ||||||||||||||||| |||||||| Sbjct 246994 CCTCCCATTCCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAAGACAATG 247053 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | || | | || | ||||| | ||| | || || || ||||| || Sbjct 247054 CAAGG-CGCCTTACTCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACTCC 247112 Query 11716 AACAAACATCTCCACAAA 11733 |||||||| ||||||||| Sbjct 247113 AACAAACAGCTCCACAAA 247130 >seq43 Length=1379160 Score = 105 bits (116), Expect = 8e-18 Identities = 225/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || ||||| || |||| ||| | || ||||| | | ||||| Sbjct 939558 TCAAGAATGTCTGCTCGGTTAGTTGCAGCAACAACTATTATACCAGTGTTACCCTCAAAT 939499 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || |||||||| || || | ||||| | ||| ||||| || ||||||||| || | Sbjct 939498 CCGTCCATCTCAGTCAGAAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCTCCA 939439 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||| | || | | | | ||||| ||||| || ||||||| || ||||| || || Sbjct 939438 ATACCGGTACCCCTTGACCTTCCCACTGCATCTATTTCATCAACAAACACAATGCAAGGA 939379 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || ||||| || || | || ||||||||||||||| Sbjct 939378 GCATTTTCCTTTGCCTTCTTGAAAAGATCACGCACTCGAGATGCTCCCACACCAACAAAC 939319 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || ||||| | || |||| | || || || || ||| | ||| || || | Sbjct 939318 ATTTCAACAAACTCTGACCCAGA--AATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 939261 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || ||||||||||| || ||||| Sbjct 939260 TAGCCTTAGCTAGCAGGGTCTTTCCAGTCCCTGG 939227 >seq477 Length=199787 Score = 100 bits (110), Expect = 4e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| |||||||||||||| ||||| | || || ||||| | ||| Sbjct 10034 TGGGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGGGAAGCATGGGTGAACCATCTCTGG 9975 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| || ||||| | | | || ||||| || ||| |||||| || | || Sbjct 9974 GACATGAAGTGATATGTTTTGATAGCCGACTCAATATCATCCTTGTGGATCCCAACAGCA 9915 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| |||| || ||| || | |||| | | || || || | | ||||| Sbjct 9914 ACCCTCATCAACAAGTGCTGGGGTCTCTCCA-CAACAGCCCCTCCGACCTTCAAGAGATA 9856 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || ||||||||||||||| |||||||||| || ||||| |||||| Sbjct 9855 TGATC-TCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCCC 9809 >seq40 Length=1826671 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || ||||| || || || | || ||||||||| || || Sbjct 1766786 GGCAAAATCACAGTGAAGCCCTTCATCACGCGATATCAACTCGTTTGAGAAGGTTAATCC 1766727 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | || ||||| |||| ||| | || | |||||| || |||||||| || Sbjct 1766726 GGGCATTAACCCGCGCTTTTTCAGCCAGAATATGGAGCAGAAGCTTCCAGAGAAGAAAAT 1766667 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || ||||| || || |||| ||| | |||||||||||| Sbjct 1766666 CCCTTCAACACAAGCGAAAGCAATAAGTCTTTCGGCGAAGGA 1766625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627417611995200