Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq204 104 3e-17 seq43 102 9e-17 seq752 98.7 1e-15 seq477 86.0 7e-12 seq40 84.2 3e-11 seq66 82.4 9e-11 >seq204 Length=519899 Score = 104 bits (114), Expect = 3e-17 Identities = 147/200 (74%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || |||||||||||||||| |||||||| | Sbjct 246936 AAACCCATCCATCTCAGTCAACAACTGATTAATAGTTTGTTCCCTCTCATCATTTCC--A 246993 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | |||| | || || ||||||||||||||||| ||||| ||| Sbjct 246994 CCTCCCATTCCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAAGACAATG 247053 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 || || | || | | ||| ||||| | ||||| ||| || | || ||||| Sbjct 247054 CAAGG-CGCCTTACTCTTAGCCTTCTCAAACAAATCCC--TCACTCTAGAAGCTCCCACT 247110 Query 9788 CCAACAAACATCTCCACAAA 9807 |||||||||| ||||||||| Sbjct 247111 CCAACAAACAGCTCCACAAA 247130 >seq43 Length=1379160 Score = 102 bits (112), Expect = 9e-17 Identities = 226/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | || || || || || | || | ||||| || | | ||||| Sbjct 939558 TCAAGAATGTCTGCTCGGTTAGTTGCAGCAACAACTATTATACCAGTGTTACCCTCAAAT 939499 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 || |||||||| |||| ||| || || | || ||||||| ||||||||| || | Sbjct 939498 CCGTCCATCTCAGTCAGAAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCTCCA 939439 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 ||| | || | | | ||||||| ||||| || ||||||| || || ||||| || Sbjct 939438 ATACCGGTACCCCTTGACCTTCCCACTGCATCTATTTCATCAACAAACACAATGCAAGGA 939379 Query 9737 TGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 |||||| || ||| ||| ||||| || || || || |||||||||||||| Sbjct 939378 GCATTTTCCTTTGCCTTCTTGAAA-AGATCACGCACTCGAGATGCTCCCACACCAACAAA 939320 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || ||||| | || | ||| || | || || || ||| || ||| || |||| Sbjct 939319 CATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 939261 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || || || ||||| || || ||||| Sbjct 939260 TAGCCTTAGCTAGCAGGGTCTTTCCAGTCCCTGG 939227 >seq752 Length=99127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 104147 GACTTTGGTTAT------TTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACGGC 104198 ||||||| |||| |||||| ||||||||||||||| || | ||||| | || || Sbjct 77305 GACTTTGATTATGATTTCTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTAAAGGT 77247 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 ||| || | ||| |||| | || || ||||||| ||| | || || | || || | Sbjct 77246 CCGAGGGGCTGTTG-TGGAGAGACCCCAACACATGTTGATGAGGGTTGCTGTTGGGATCC 77188 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTC 104317 | ||| || ||||| || | | | |||||| || |||||||| |||| |||| Sbjct 77187 ACAAGGATGATATTGAGTCGGCTATCAAAACATACCACTTCATGTCCCAGAGGTG-GTTC 77129 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | || || | ||||| |||||||||||||| |||||||| |||||| Sbjct 77128 ACCCATGCTTCCCCAACTCTCTTCAATGCTGGCACACCAAGGCCCCAA 77081 >seq477 Length=199787 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAAC 104195 || |||| || | || ||| |||||| ||||||||||||||| || | ||||| | | Sbjct 9808 AGGGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGA-GATCATATCTCTTGAA 9866 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || || | ||| |||| | || ||| || |||| ||| | || || | || | Sbjct 9867 GGTCGGAGGGGCTGTTG-TGGAGAGACCCCAGCACTTGTTGATGAGGGTTGCTGTTGGGA 9925 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 | || ||| || ||||| || | | | ||||| || |||||||| | || Sbjct 9926 TCCACAAGGATGATATTGAGTCGGCTATCAAAACATATCACTTCATGTCCCAGAGATGGT 9985 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || || | ||||| |||||||||||||| |||||||| |||||| Sbjct 9986 TCACCCATGCTTCCCCAACTCTCTTCAATGCTGGCACACCAAGGCCCCAA 10035 >seq40 Length=1826671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || || |||| | || || || |||||||| || || ||||||||||| | Sbjct 1766625 TCCTTCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGC 1766684 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | || | ||||| || ||||| || | ||||| || | |||||| ||| Sbjct 1766685 TTCTGCTCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAAC 1766744 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| | || || ||||| || || || ||| || ||||| Sbjct 1766745 GAGTTGATATCGCGTGATGAAGGGCTTCACTGTGATTTTGC 1766785 >seq66 Length=1001823 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||| | || | || || || || ||||| || ||||||||||| || || Sbjct 952941 CTTTGCCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGAAGTTT 953000 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || | |||||||| ||||| || | ||||| || | |||||| ||||| Sbjct 953001 CTGCTCCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGA 953060 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| || || || ||||| || || ||| Sbjct 953061 GCTGATATCGCGAGACGAAGGGCTTCAC 953088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582690210540880