Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq66 125 8e-24 seq40 102 9e-17 >seq66 Length=1001823 Score = 125 bits (138), Expect = 8e-24 Identities = 300/445 (67%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||||| || || |||| |||| ||||||||||| || || || || || Sbjct 952647 CGACGAGCAACACTTTATCACCCATATCCTCGCCTTCTTCGCCGCCTCCGACGGCATAGT 952706 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | |||||| | | | | || || || |||||| |||| ||||| || | || Sbjct 952707 CCTAGAAAATCTCGCCGGCAGATTCATGAAAGAGGTCCAGGTTGCTGAGGCGCGCGCCTT 952766 Query 59798 CTACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||||| || || | | ||| ||| ||||||||||| | |||||| ||| | | Sbjct 952767 CTACGGGTTCCAAATAG--CAATCGAAAACATCCACTCCGAAATGTACTCTCTCCTCCTA 952824 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TC 59914 || | | |||| || | || || | || ||||| || || ||||| || Sbjct 952825 GAAACCTACATCAAAGACTCAGAGCTTAAATCCCACCTCTTCCGAGCAATCGAGACCATC 952884 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCAT 59973 ||| || || || | ||||| || |||||| | | ||||| || | | || || | Sbjct 952885 CCCTGC-GTGAAGAAGAAAGCGGAGTGGGCCCTCCGATGGATTGACGGC-GCAGAATGCT 952942 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| | | || || ||||| || ||||| ||||| ||||||||||| || |||| Sbjct 952943 TTGCCGAGAGGCTAATTGCTTTCGCTTGCGTTGAAGGGATCTTCTTCTCCGGAAGTTTCT 953002 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | | || ||||||||||||||||| || | ||||| || | | ||||| ||||||| Sbjct 953003 GCTCCATATTCTGGCTCAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGAGC 953062 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || ||||| || || || Sbjct 953063 TGATATCGCGAGACGAAGGGCTTCA 953087 >seq40 Length=1826671 Score = 102 bits (112), Expect = 9e-17 Identities = 293/445 (66%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||||| || ||||||| |||| ||||||||||| || ||| || || || Sbjct 1766333 CGACGAGCAACACTTCATCACCCACATCCTCGCCTTCTTCGCCGCCTCTGACGGCATCGT 1766392 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | |||||| | | | | || || || |||||| | || ||||| || | || Sbjct 1766393 CCTCGAAAATCTCGCCGGAAGATTCATGAAAGACGTCCAGGTAGCAGAGGCGCGCGCCTT 1766452 Query 59798 CTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 ||||| | || ||| || || |||||||| || | ||| || ||| | | | Sbjct 1766453 CTACGGCTTCCAAATCGC-CATTGAAAACATCCACTCGGAAATGTATTCCCTCCTCTTAG 1766511 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCC 59916 | | | |||| || | || || | || ||||| || || ||||| || Sbjct 1766512 AAACCTACATCAAAGACTCCGACCTTAAATCCCACCTCTTCCGCGCAATCGAGACCATCC 1766571 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCA---TCAT 59973 || || || | |||||||| |||||| | | ||||| | | |||||| || | Sbjct 1766572 CCTGTGTGAAGAAGAAAGCAGATTGGGCCCTCCGATGGATC-GAC--GGAGCAGAATCCT 1766628 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || || | || || ||||| || || || ||||| || ||||||||||| |||| Sbjct 1766629 TCGCCGAAAGACTTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGCTTCT 1766688 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | | || |||||||| |||||||| || | ||||| || | | ||||| |||||| Sbjct 1766689 GCTCCATATTCTGGCTGAAAAAGCGCGGGTTAATGCCCGGATTAACCTTCTCAAACGAGT 1766748 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || || || || || || Sbjct 1766749 TGATATCGCGTGATGAAGGGCTTCA 1766773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547988191901280