Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq52 345 5e-90 seq119 241 2e-58 seq1 161 1e-34 seq1508 125 9e-24 seq219 125 9e-24 >seq52 Length=1114353 Score = 345 bits (382), Expect = 5e-90 Identities = 492/687 (72%), Gaps = 4/687 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGAT-TCCATGTCTGCTCACTGCTGCAGCATGT 176205 ||||| |||| ||||||||||| | ||||| || | | | | ||||| | | ||| Sbjct 279520 TTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCT-TATTGACTGCAACTTC-TGT 279463 Query 176206 -TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGT 176264 ||||| | || || ||||| | || || || ||||| || |||||||| ||||| || Sbjct 279462 ATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGT 279403 Query 176265 AGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAA 176324 | ||||||||||| || ||||| || || || | || || | | || | || | Sbjct 279402 TTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTAC 279343 Query 176325 CGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTA 176384 || || || | ||||| || ||||| |||||||| ||| | ||||| || ||| | || Sbjct 279342 AGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATA 279283 Query 176385 CAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACAT 176444 |||||| || || || |||| |||| | |||||| | | ||| | | ||| || Sbjct 279282 CAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATAT 279223 Query 176445 GGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 ||| || | ||||||||||||| | | ||||| ||||| |||||||| ||||||||| Sbjct 279222 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATA 279163 Query 176505 CTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATC 176564 || || ||||| | | || | || |||||| | |||| ||| ||||||||||| Sbjct 279162 TTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAA 279103 Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 || ||||||||||||||||| | || || |||| |||||||||||| || ||||||| Sbjct 279102 CTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATTATATTCCA 279043 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGG 176684 || ||| ||||||| || ||||||||||| || ||| | || |||| ||||| || || Sbjct 279042 GGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGTATTCGG 278983 Query 176685 TGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGAC 176744 ||| || || || || ||||| || | || |||||| | |||| || || Sbjct 278982 TGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAAC 278923 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || |||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 278922 CACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAA 278863 Query 176805 CATTGTAGCTGCACACGGTTACTTTGG 176831 || |||||||| || ||||| ||||| Sbjct 278862 TATCGTAGCTGCTCATGGTTATTTTGG 278836 >seq119 Length=805478 Score = 241 bits (266), Expect = 2e-58 Identities = 349/493 (71%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 176235 TGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACAT 176294 ||| ||||| || |||||||| ||||| || | ||||||||||| || |||| || || Sbjct 179542 TGTTGATATTGATGGTATTCGTGAACCTGTGTCCGGATCTCTACTTTACTGAAATAATAT 179601 Query 176295 CATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTG 176354 || || | || | | || | || || || || ||||| || ||||| || Sbjct 179602 TATTTCGGCTGCCATTATTCCTACTTCTGCAGCTATAGGGTGGCACTTTTATCCAATATG 179661 Query 176355 GGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATT 176414 |||||| || | ||||| || ||| | |||||||| || || || ||| |||| | Sbjct 179662 GGAAGCGACATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACAAATTGTTCT 179721 Query 176415 CCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACT 176474 |||||| | | ||| | | ||| ||||| | | ||||||||||||| | | | Sbjct 179722 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTTT 179781 Query 176475 AGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGT 176534 ||| ||||| |||| || ||||||||| || || ||||| | | | | | || || Sbjct 179782 AGGTATGCGCCCTTATATTGCTGTTGCATATTCCGCTCCAGTTGCAGTACCTACTGCTGT 179841 Query 176535 TTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTC 176594 |||| | |||| ||| ||| ||||||| | | ||||||||||||||||| || || || Sbjct 179842 TTTCTTGATCTACCCAATCGATCAAGGAACCTATTCTGATGGTATGCCTCTAGGAATCTC 179901 Query 176595 AGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 | ||| ||||||||| || |||||||||| || ||||||||||| || |||||| |||| Sbjct 179902 CGATACTTTCAACTTTGTGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCATT 179961 Query 176655 CCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAG 176714 || ||| | || ||| | ||||| || || || || || || || ||||| || Sbjct 179962 TCACATGTTAGGTGTACCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 180021 Query 176715 TCTTGTTACTTCT 176727 ||||| |||||| Sbjct 180022 CCTTGTAACTTCT 180034 Score = 217 bits (240), Expect = 2e-51 Identities = 246/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||||| |||||| ||||| | ||| || || || || |||||||| || ||||| ||| Sbjct 240430 GGTTACAGATTCGGTCAAGAGGGAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 240489 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTT 176889 ||||| | |||||||| |||||| |||||| ||||| | | | ||||||||| | Sbjct 240490 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 240549 Query 176890 GCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTC 176949 || || | || || || | || ||||||||||| | ||| || | || || | ||| Sbjct 240550 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATCGATTTC 240609 Query 176950 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCT 177009 || | || |||||||| |||||||| ||||| | || | ||| || ||| | Sbjct 240610 AAGTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 240669 Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| |||||| |||||||| | ||||||| |||| |||||||||| || |||||| Sbjct 240670 ACTTGGGCTGATATCATTAACCGTCCTAACCTTGATATGTAAGTTATGCATGAACGTAAT 240729 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||| |||||||| || ||||| | |||| Sbjct 240730 GCTCATAACTTCCCTCTAGACCTAGATGCT 240759 >seq1 Length=3292865 Score = 161 bits (178), Expect = 1e-34 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||||||||| | ||| || | || ||||| |||||| | || |||||||| ||| Sbjct 1433772 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACTTAAATGGTTTCAATTTC 1433713 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | || | ||| || ||| ||| |||| |||||| ||||| Sbjct 1433712 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAAC 1433653 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| ||||||||||||||||||||||| || ||||||||||| |||||||| || ||| Sbjct 1433652 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 1433593 Query 177091 CTTGCTGCT 177099 || |||||| Sbjct 1433592 CTAGCTGCT 1433584 >seq1508 Length=419047 Score = 125 bits (138), Expect = 9e-24 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | ||||| | | ||| Sbjct 272722 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTA 272664 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 272663 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 272604 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || ||||| || || || || || || | | || | || Sbjct 272603 TCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCA 272544 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || |||||||||||||| ||| | ||||| || ||| | ||| Sbjct 272543 GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATAC 272484 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421 ||||| || || || |||| |||| | |||||| Sbjct 272483 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 272448 >seq219 Length=449544 Score = 125 bits (138), Expect = 9e-24 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | ||||| | | ||| Sbjct 176415 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTA 176357 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 176356 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 176297 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || ||||| || || || || || || | | || | || Sbjct 176296 TCCGGATCTCTACTTTACGGAAATAATATTATTTCGGGTGCCATTATTCCTACTTCTGCA 176237 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || |||||||||||||| ||| | ||||| || ||| | ||| Sbjct 176236 GCTATAGGGTTGCACTTTTATCCAATCTGGGAAGCGGCATCGGTTGATGAGTGGTTATAC 176177 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421 ||||| || || || |||| |||| | |||||| Sbjct 176176 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 176141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602904016515840